Package: CovidMutations
Type: Package
Title: Mutation Analysis and Assay Validation Toolkit for COVID-19
        (Coronavirus Disease 2019)
Version: 0.1.3
Date: 2020-08-29
Authors@R: 
    c(
      person(
        "Shaoqian",
        "Ma",
        email = "shaoqianma@qq.com",
        role = c("aut", "cre"),
        comment = c(ORCID = '0000-0001-8950-0711')
      ),
      person(
        "Yongyou",
        "Zhang",
        email = "yongyouzhang@xmu.edu.cn",
        role = c("aut"),
        comment = c(ORCID = '0000-0003-2413-9106')
      )
      )
Description: A feasible framework for mutation analysis and reverse
        transcription polymerase chain reaction (RT-PCR) assay
        evaluation of COVID-19, including mutation profile
        visualization, statistics and mutation ratio of each assay. The
        mutation ratio is conducive to evaluating the coverage of
        RT-PCR assays in large-sized
        samples<doi:10.20944/preprints202004.0529.v1>.
Depends: R (>= 3.6)
License: GPL-3 | file LICENSE
Encoding: UTF-8
LazyData: true
Imports: ggplot2, cowplot, seqinr, stringr, grDevices, graphics, utils,
        ggpubr, dplyr, VennDiagram
RoxygenNote: 7.1.1
NeedsCompilation: no
URL: https://github.com/MSQ-123/CovidMutations
BugReports: https://github.com/MSQ-123/CovidMutations/issues
Suggests: knitr, rmarkdown, testthat, BiocStyle
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev zlib1g-dev
Repository: https://msq-123.r-universe.dev
Date/Publication: 2020-08-29 13:59:43 UTC
RemoteUrl: https://github.com/msq-123/covidmutations
RemoteRef: HEAD
RemoteSha: b4521bdd86dc2cf2754433a0396b9b79b08be1e1
Packaged: 2026-06-17 10:34:32 UTC; root
Author: Shaoqian Ma [aut, cre] (ORCID: <https://orcid.org/0000-0001-8950-0711>),
  Yongyou Zhang [aut] (ORCID: <https://orcid.org/0000-0003-2413-9106>)
Maintainer: Shaoqian Ma <shaoqianma@qq.com>