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{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"8963","refvar":"T","qvar":"C","qpos":"8963","qlength":"29903","protein":"NSP4","variant":"S137P","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"16846","refvar":"G","qvar":"T","qpos":"16846","qlength":"29903","protein":"NSP13","variant":"D204Y","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"21781","refvar":"C","qvar":"T","qpos":"21781","qlength":"29903","protein":"S","variant":"T73T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"24856","refvar":"T","qvar":"C","qpos":"24856","qlength":"29903","protein":"S","variant":"N1098N","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Germany/Br-ZK-1/2020|EPI_ISL_491115|2020-04-27","refpos":"29415","refvar":"C","qvar":"T","qpos":"29415","qlength":"29903","protein":"N","variant":"A381V","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"18","refvar":"TC","qvar":"GG","qpos":"11","qlength":"29896","protein":"5'UTR","variant":"18","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"222","refvar":"C","qvar":"T","qpos":"215","qlength":"29896","protein":"5'UTR","variant":"222","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"3558","refvar":"A","qvar":"G","qpos":"3551","qlength":"29896","protein":"NSP3","variant":"K280R","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"6693","refvar":"A","qvar":"G","qpos":"6686","qlength":"29896","protein":"NSP3","variant":"K1325R","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"8782","refvar":"C","qvar":"T","qpos":"8775","qlength":"29896","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"17747","refvar":"C","qvar":"T","qpos":"17740","qlength":"29896","protein":"NSP13","variant":"P504L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"17858","refvar":"A","qvar":"G","qpos":"17851","qlength":"29896","protein":"NSP13","variant":"Y541C","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"18060","refvar":"C","qvar":"T","qpos":"18053","qlength":"29896","protein":"NSP14","variant":"L7L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"28144","refvar":"T","qvar":"C","qpos":"28137","qlength":"29896","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"29868","refvar":"G","qvar":"A","qpos":"29861","qlength":"29896","protein":"3'UTR","variant":"29868","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-4051/2020|EPI_ISL_437813|2020-04-01","refpos":"29870","refvar":"C","qvar":"A","qpos":"29863","qlength":"29896","protein":"3'UTR","variant":"29870","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-1784/2020|EPI_ISL_424261|2020-03-21","refpos":"34","refvar":"AACC","qvar":"TTTA","qpos":"26","qlength":"29859","protein":"5'UTR","variant":"34","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-1784/2020|EPI_ISL_424261|2020-03-21","refpos":"8782","refvar":"C","qvar":"T","qpos":"8774","qlength":"29859","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/WA-UW-1784/2020|EPI_ISL_424261|2020-03-21","refpos":"17747","refvar":"C","qvar":"T","qpos":"17739","qlength":"29859","protein":"NSP13","variant":"P504L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-UW-1784/2020|EPI_ISL_424261|2020-03-21","refpos":"17858","refvar":"A","qvar":"G","qpos":"17850","qlength":"29859","protein":"NSP13","variant":"Y541C","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-UW-1784/2020|EPI_ISL_424261|2020-03-21","refpos":"18060","refvar":"C","qvar":"T","qpos":"18052","qlength":"29859","protein":"NSP14","variant":"L7L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WA-UW-1784/2020|EPI_ISL_424261|2020-03-21","refpos":"22984","refvar":"G","qvar":"A","qpos":"22976","qlength":"29859","protein":"S","variant":"Q474Q","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-UW-1784/2020|EPI_ISL_424261|2020-03-21","refpos":"27384","refvar":"T","qvar":"C","qpos":"27376","qlength":"29859","protein":"ORF6","variant":"D61D","varclass":"SNP_silent","annotation":"ORF6 protein"}
{"sample":"hCoV-19/USA/WA-UW-1784/2020|EPI_ISL_424261|2020-03-21","refpos":"28144","refvar":"T","qvar":"C","qpos":"28136","qlength":"29859","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/WA-UW-2149/2020|EPI_ISL_426101|2020-03-25","refpos":"34","refvar":"AACC","qvar":"TTTA","qpos":"19","qlength":"29857","protein":"5'UTR","variant":"34","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-2149/2020|EPI_ISL_426101|2020-03-25","refpos":"241","refvar":"C","qvar":"T","qpos":"226","qlength":"29857","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-2149/2020|EPI_ISL_426101|2020-03-25","refpos":"1059","refvar":"C","qvar":"T","qpos":"1044","qlength":"29857","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-UW-2149/2020|EPI_ISL_426101|2020-03-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"3022","qlength":"29857","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-UW-2149/2020|EPI_ISL_426101|2020-03-25","refpos":"9951","refvar":"C","qvar":"T","qpos":"9936","qlength":"29857","protein":"NSP4","variant":"A466V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/WA-UW-2149/2020|EPI_ISL_426101|2020-03-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14393","qlength":"29857","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-UW-2149/2020|EPI_ISL_426101|2020-03-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23388","qlength":"29857","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-UW-2149/2020|EPI_ISL_426101|2020-03-25","refpos":"25563","refvar":"G","qvar":"T","qpos":"25548","qlength":"29857","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-UW-4338/2020|EPI_ISL_430943|2020-03-30","refpos":"34","refvar":"AAC","qvar":"TTT","qpos":"28","qlength":"29897","protein":"5'UTR","variant":"34","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-4338/2020|EPI_ISL_430943|2020-03-30","refpos":"241","refvar":"C","qvar":"T","qpos":"235","qlength":"29897","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-4338/2020|EPI_ISL_430943|2020-03-30","refpos":"1059","refvar":"C","qvar":"T","qpos":"1053","qlength":"29897","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-UW-4338/2020|EPI_ISL_430943|2020-03-30","refpos":"1514","refvar":"C","qvar":"T","qpos":"1508","qlength":"29897","protein":"NSP2","variant":"H237Y","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-UW-4338/2020|EPI_ISL_430943|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"3031","qlength":"29897","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-UW-4338/2020|EPI_ISL_430943|2020-03-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14402","qlength":"29897","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-UW-4338/2020|EPI_ISL_430943|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23397","qlength":"29897","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/USA/WA-UW-4338/2020|EPI_ISL_430943|2020-03-30","refpos":"29553","refvar":"G","qvar":"A","qpos":"29547","qlength":"29897","protein":"intergenic","variant":"29553","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-4338/2020|EPI_ISL_430943|2020-03-30","refpos":"29870","refvar":"C","qvar":"A","qpos":"29864","qlength":"29897","protein":"3'UTR","variant":"29870","varclass":"extragenic"}
{"sample":"hCoV-19/USA/UN-UW-581/2020|EPI_ISL_430890|2020-03-12","refpos":"36","refvar":"C","qvar":"T","qpos":"25","qlength":"29864","protein":"5'UTR","variant":"36","varclass":"extragenic"}
{"sample":"hCoV-19/USA/UN-UW-581/2020|EPI_ISL_430890|2020-03-12","refpos":"8782","refvar":"C","qvar":"T","qpos":"8771","qlength":"29864","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/UN-UW-581/2020|EPI_ISL_430890|2020-03-12","refpos":"17747","refvar":"C","qvar":"T","qpos":"17736","qlength":"29864","protein":"NSP13","variant":"P504L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/UN-UW-581/2020|EPI_ISL_430890|2020-03-12","refpos":"17858","refvar":"A","qvar":"G","qpos":"17847","qlength":"29864","protein":"NSP13","variant":"Y541C","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/UN-UW-581/2020|EPI_ISL_430890|2020-03-12","refpos":"18060","refvar":"C","qvar":"T","qpos":"18049","qlength":"29864","protein":"NSP14","variant":"L7L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/UN-UW-581/2020|EPI_ISL_430890|2020-03-12","refpos":"28144","refvar":"T","qvar":"C","qpos":"28133","qlength":"29864","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/UN-UW-581/2020|EPI_ISL_430890|2020-03-12","refpos":"28910","refvar":"A","qvar":"T","qpos":"28899","qlength":"29864","protein":"N","variant":"N213Y","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Shanghai/SH0027/2020|EPI_ISL_416336|2020-02-01","refpos":"49","refvar":"T","qvar":"A","qpos":"16","qlength":"29833","protein":"5'UTR","variant":"49","varclass":"extragenic"}
{"sample":"hCoV-19/Shanghai/SH0027/2020|EPI_ISL_416336|2020-02-01","refpos":"14676","refvar":"C","qvar":"T","qpos":"14643","qlength":"29833","protein":"NSP12b","variant":"P403P","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Shanghai/SH0027/2020|EPI_ISL_416336|2020-02-01","refpos":"28826","refvar":"C","qvar":"T","qpos":"28793","qlength":"29833","protein":"N","variant":"R185C","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/NY-NYUMC439/2020|EPI_ISL_435506|2020-04-15","refpos":"124","refvar":"G","qvar":"A","qpos":"124","qlength":"29903","protein":"5'UTR","variant":"124","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-NYUMC439/2020|EPI_ISL_435506|2020-04-15","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-NYUMC439/2020|EPI_ISL_435506|2020-04-15","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-NYUMC439/2020|EPI_ISL_435506|2020-04-15","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NY-NYUMC439/2020|EPI_ISL_435506|2020-04-15","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/NY-NYUMC439/2020|EPI_ISL_435506|2020-04-15","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-NYUMC439/2020|EPI_ISL_435506|2020-04-15","refpos":"23538","refvar":"C","qvar":"T","qpos":"23538","qlength":"29903","protein":"S","variant":"S659L","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-NYUMC439/2020|EPI_ISL_435506|2020-04-15","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/BRIS-12F486/2020|EPI_ISL_488331|2020-04-10","refpos":"139","refvar":"ACTA","qvar":".","qpos":"84","qlength":"29778","protein":"5'UTR","variant":"139","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-12F486/2020|EPI_ISL_488331|2020-04-10","refpos":"241","refvar":"C","qvar":"T","qpos":"183","qlength":"29778","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-12F486/2020|EPI_ISL_488331|2020-04-10","refpos":"3037","refvar":"C","qvar":"T","qpos":"2979","qlength":"29778","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12F486/2020|EPI_ISL_488331|2020-04-10","refpos":"6720","refvar":"C","qvar":"T","qpos":"6662","qlength":"29778","protein":"NSP3","variant":"T1334I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12F486/2020|EPI_ISL_488331|2020-04-10","refpos":"14408","refvar":"C","qvar":"T","qpos":"14350","qlength":"29778","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-12F486/2020|EPI_ISL_488331|2020-04-10","refpos":"23403","refvar":"A","qvar":"G","qpos":"23345","qlength":"29778","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12F486/2020|EPI_ISL_488331|2020-04-10","refpos":"25489","refvar":"G","qvar":"T","qpos":"25431","qlength":"29778","protein":"ORF3a","variant":"A33S","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/LIVE-9E73F/2020|EPI_ISL_453327|2020-04-09","refpos":"180","refvar":"C","qvar":"T","qpos":"175","qlength":"29861","protein":"5'UTR","variant":"180","varclass":"extragenic"}
{"sample":"hCoV-19/England/LIVE-9E73F/2020|EPI_ISL_453327|2020-04-09","refpos":"241","refvar":"C","qvar":"T","qpos":"236","qlength":"29861","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/LIVE-9E73F/2020|EPI_ISL_453327|2020-04-09","refpos":"3037","refvar":"C","qvar":"T","qpos":"3032","qlength":"29861","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/LIVE-9E73F/2020|EPI_ISL_453327|2020-04-09","refpos":"13862","refvar":"C","qvar":"T","qpos":"13857","qlength":"29861","protein":"NSP12b","variant":"T132I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/LIVE-9E73F/2020|EPI_ISL_453327|2020-04-09","refpos":"14408","refvar":"C","qvar":"T","qpos":"14403","qlength":"29861","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/LIVE-9E73F/2020|EPI_ISL_453327|2020-04-09","refpos":"23403","refvar":"A","qvar":"G","qpos":"23398","qlength":"29861","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/LIVE-9E73F/2020|EPI_ISL_453327|2020-04-09","refpos":"27739","refvar":"C","qvar":"T","qpos":"27734","qlength":"29861","protein":"ORF7a","variant":"L116F","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/England/LIVE-9E73F/2020|EPI_ISL_453327|2020-04-09","refpos":"28836","refvar":"C","qvar":"T","qpos":"28831","qlength":"29861","protein":"N","variant":"S188L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Belgium/VPP-0331379/2020|EPI_ISL_462233|2020-03-31","refpos":"187","refvar":"A","qvar":"G","qpos":"133","qlength":"29782","protein":"5'UTR","variant":"187","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/VPP-0331379/2020|EPI_ISL_462233|2020-03-31","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/VPP-0331379/2020|EPI_ISL_462233|2020-03-31","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/VPP-0331379/2020|EPI_ISL_462233|2020-03-31","refpos":"3269","refvar":"A","qvar":"C","qpos":"3215","qlength":"29782","protein":"NSP3","variant":"I184L","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/VPP-0331379/2020|EPI_ISL_462233|2020-03-31","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/VPP-0331379/2020|EPI_ISL_462233|2020-03-31","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Luxembourg/LNS9627078/2020|EPI_ISL_419604|2020-03-15","refpos":"187","refvar":"A","qvar":"G","qpos":"157","qlength":"29826","protein":"5'UTR","variant":"187","varclass":"extragenic"}
{"sample":"hCoV-19/Luxembourg/LNS9627078/2020|EPI_ISL_419604|2020-03-15","refpos":"241","refvar":"C","qvar":"T","qpos":"211","qlength":"29826","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Luxembourg/LNS9627078/2020|EPI_ISL_419604|2020-03-15","refpos":"3037","refvar":"C","qvar":"T","qpos":"3007","qlength":"29826","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Luxembourg/LNS9627078/2020|EPI_ISL_419604|2020-03-15","refpos":"11439","refvar":"A","qvar":"G","qpos":"11409","qlength":"29826","protein":"NSP6","variant":"N156S","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Luxembourg/LNS9627078/2020|EPI_ISL_419604|2020-03-15","refpos":"14408","refvar":"C","qvar":"T","qpos":"14378","qlength":"29826","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Luxembourg/LNS9627078/2020|EPI_ISL_419604|2020-03-15","refpos":"23403","refvar":"A","qvar":"G","qpos":"23373","qlength":"29826","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_36/2020|EPI_ISL_422908|2020-03-17","refpos":"187","refvar":"A","qvar":"G","qpos":"133","qlength":"29775","protein":"5'UTR","variant":"187","varclass":"extragenic"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_36/2020|EPI_ISL_422908|2020-03-17","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29775","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_36/2020|EPI_ISL_422908|2020-03-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29775","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_36/2020|EPI_ISL_422908|2020-03-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29775","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_36/2020|EPI_ISL_422908|2020-03-17","refpos":"16017","refvar":"C","qvar":"T","qpos":"15963","qlength":"29775","protein":"NSP12b","variant":"F850F","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_36/2020|EPI_ISL_422908|2020-03-17","refpos":"16515","refvar":"T","qvar":"C","qpos":"16461","qlength":"29775","protein":"NSP13","variant":"Y93Y","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_36/2020|EPI_ISL_422908|2020-03-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29775","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/CVR19/2020|EPI_ISL_425724|2020-03-12","refpos":"187","refvar":"A","qvar":"G","qpos":"133","qlength":"29782","protein":"5'UTR","variant":"187","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/CVR19/2020|EPI_ISL_425724|2020-03-12","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/CVR19/2020|EPI_ISL_425724|2020-03-12","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR19/2020|EPI_ISL_425724|2020-03-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR19/2020|EPI_ISL_425724|2020-03-12","refpos":"18651","refvar":"G","qvar":"T","qpos":"18597","qlength":"29782","protein":"NSP14","variant":"E204D","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Scotland/CVR19/2020|EPI_ISL_425724|2020-03-12","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Chile/LaFlorida-26639/2020|EPI_ISL_459858|2020-03-17","refpos":"203","refvar":"C","qvar":"T","qpos":"149","qlength":"29782","protein":"5'UTR","variant":"203","varclass":"extragenic"}
{"sample":"hCoV-19/Chile/LaFlorida-26639/2020|EPI_ISL_459858|2020-03-17","refpos":"8782","refvar":"C","qvar":"T","qpos":"8728","qlength":"29782","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Chile/LaFlorida-26639/2020|EPI_ISL_459858|2020-03-17","refpos":"9477","refvar":"T","qvar":"A","qpos":"9423","qlength":"29782","protein":"NSP4","variant":"F308Y","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Chile/LaFlorida-26639/2020|EPI_ISL_459858|2020-03-17","refpos":"14805","refvar":"C","qvar":"T","qpos":"14751","qlength":"29782","protein":"NSP12b","variant":"Y446Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Chile/LaFlorida-26639/2020|EPI_ISL_459858|2020-03-17","refpos":"22151","refvar":"A","qvar":"G","qpos":"22097","qlength":"29782","protein":"S","variant":"I197V","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Chile/LaFlorida-26639/2020|EPI_ISL_459858|2020-03-17","refpos":"25979","refvar":"G","qvar":"T","qpos":"25925","qlength":"29782","protein":"ORF3a","variant":"G196V","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Chile/LaFlorida-26639/2020|EPI_ISL_459858|2020-03-17","refpos":"28144","refvar":"T","qvar":"C","qpos":"28090","qlength":"29782","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/Chile/LaFlorida-26639/2020|EPI_ISL_459858|2020-03-17","refpos":"28657","refvar":"C","qvar":"T","qpos":"28603","qlength":"29782","protein":"N","variant":"D128D","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Chile/LaFlorida-26639/2020|EPI_ISL_459858|2020-03-17","refpos":"28863","refvar":"C","qvar":"T","qpos":"28809","qlength":"29782","protein":"N","variant":"S197L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"221","refvar":"T","qvar":"C","qpos":"167","qlength":"29782","protein":"5'UTR","variant":"221","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"10097","refvar":"G","qvar":"A","qpos":"10043","qlength":"29782","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"13216","refvar":"T","qvar":"G","qpos":"13162","qlength":"29782","protein":"NSP10","variant":"D64E","varclass":"SNP","annotation":"Growth-factor-like protein"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"18486","refvar":"C","qvar":"T","qpos":"18432","qlength":"29782","protein":"NSP14","variant":"L149L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"23731","refvar":"C","qvar":"T","qpos":"23677","qlength":"29782","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"23932","refvar":"A","qvar":"T","qpos":"23878","qlength":"29782","protein":"S","variant":"K790N","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-128E25/2020|EPI_ISL_458771|2020-04-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/20189166901/2020|EPI_ISL_465570|2020-05-01","refpos":"222","refvar":"C","qvar":"T","qpos":"222","qlength":"29903","protein":"5'UTR","variant":"222","varclass":"extragenic"}
{"sample":"hCoV-19/England/20189166901/2020|EPI_ISL_465570|2020-05-01","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/20189166901/2020|EPI_ISL_465570|2020-05-01","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/20189166901/2020|EPI_ISL_465570|2020-05-01","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/20189166901/2020|EPI_ISL_465570|2020-05-01","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/20189166901/2020|EPI_ISL_465570|2020-05-01","refpos":"26746","refvar":"G","qvar":"T","qpos":"26746","qlength":"29903","protein":"M","variant":"W75L","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/England/20189166901/2020|EPI_ISL_465570|2020-05-01","refpos":"28300","refvar":"G","qvar":"T","qpos":"28300","qlength":"29903","protein":"N","variant":"Q9H","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/20189166901/2020|EPI_ISL_465570|2020-05-01","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/20189166901/2020|EPI_ISL_465570|2020-05-01","refpos":"29301","refvar":"A","qvar":"G","qpos":"29301","qlength":"29903","protein":"N","variant":"D343G","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-12AC1A/2020|EPI_ISL_458313|2020-05-01","refpos":"222","refvar":"C","qvar":"T","qpos":"168","qlength":"29782","protein":"5'UTR","variant":"222","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-12AC1A/2020|EPI_ISL_458313|2020-05-01","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-12AC1A/2020|EPI_ISL_458313|2020-05-01","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12AC1A/2020|EPI_ISL_458313|2020-05-01","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-12AC1A/2020|EPI_ISL_458313|2020-05-01","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12AC1A/2020|EPI_ISL_458313|2020-05-01","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"222","refvar":"C","qvar":"T","qpos":"221","qlength":"29900","protein":"5'UTR","variant":"222","varclass":"extragenic"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"6312","refvar":"C","qvar":"A","qpos":"6311","qlength":"29900","protein":"NSP3","variant":"T1198K","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"7609","refvar":"C","qvar":"T","qpos":"7608","qlength":"29900","protein":"NSP3","variant":"H1630H","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"11083","refvar":"G","qvar":"T","qpos":"11082","qlength":"29900","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"13730","refvar":"C","qvar":"T","qpos":"13729","qlength":"29900","protein":"NSP12b","variant":"A88V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"16939","refvar":"T","qvar":"C","qpos":"16938","qlength":"29900","protein":"NSP13","variant":"P234P","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"23929","refvar":"C","qvar":"T","qpos":"23928","qlength":"29900","protein":"S","variant":"Y789Y","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"26019","refvar":"A","qvar":"G","qpos":"26018","qlength":"29900","protein":"ORF3a","variant":"S209S","varclass":"SNP_silent","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"28297","refvar":"T","qvar":"C","qpos":"28296","qlength":"29900","protein":"N","variant":"N8N","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Taiwan/CGMH-CGU-26/2020|EPI_ISL_452178|2020-04-19","refpos":"28311","refvar":"C","qvar":"T","qpos":"28310","qlength":"29900","protein":"N","variant":"P13L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/CAMB-1AED39/2020|EPI_ISL_448077|2020-05-07","refpos":"225","refvar":"C","qvar":"T","qpos":"225","qlength":"29903","protein":"5'UTR","variant":"225","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-1AED39/2020|EPI_ISL_448077|2020-05-07","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-1AED39/2020|EPI_ISL_448077|2020-05-07","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-1AED39/2020|EPI_ISL_448077|2020-05-07","refpos":"7777","refvar":"C","qvar":"T","qpos":"7777","qlength":"29903","protein":"NSP3","variant":"Y1686Y","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-1AED39/2020|EPI_ISL_448077|2020-05-07","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-1AED39/2020|EPI_ISL_448077|2020-05-07","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-1AED39/2020|EPI_ISL_448077|2020-05-07","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"241","refvar":"C","qvar":"T","qpos":"197","qlength":"29804","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2993","qlength":"29804","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"4002","refvar":"C","qvar":"T","qpos":"3958","qlength":"29804","protein":"NSP3","variant":"T428I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"10097","refvar":"G","qvar":"A","qpos":"10053","qlength":"29804","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"11083","refvar":"G","qvar":"T","qpos":"11039","qlength":"29804","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"13536","refvar":"C","qvar":"T","qpos":"13492","qlength":"29804","protein":"NSP12b","variant":"Y23Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14364","qlength":"29804","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"18246","refvar":"C","qvar":"T","qpos":"18202","qlength":"29804","protein":"NSP14","variant":"Y69Y","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23359","qlength":"29804","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"23731","refvar":"C","qvar":"T","qpos":"23687","qlength":"29804","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Argentina/PAIS-A0018/2020|EPI_ISL_430809|2020-04-04","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28837","qlength":"29804","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Australia/VIC1300/2020|EPI_ISL_430677|2020-04-10","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Australia/VIC1300/2020|EPI_ISL_430677|2020-04-10","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/VIC1300/2020|EPI_ISL_430677|2020-04-10","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/VIC1300/2020|EPI_ISL_430677|2020-04-10","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/VIC1300/2020|EPI_ISL_430677|2020-04-10","refpos":"27812","refvar":"C","qvar":"T","qpos":"27812","qlength":"29903","protein":"ORF7b","variant":"F19F","varclass":"SNP_silent","annotation":"ORF7b protein"}
{"sample":"hCoV-19/Australia/VIC1300/2020|EPI_ISL_430677|2020-04-10","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"241","refvar":"C","qvar":"T","qpos":"203","qlength":"29814","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"3037","refvar":"C","qvar":"T","qpos":"2999","qlength":"29814","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"12036","refvar":"C","qvar":"T","qpos":"11998","qlength":"29814","protein":"NSP7","variant":"A65V","varclass":"SNP","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"14408","refvar":"C","qvar":"T","qpos":"14370","qlength":"29814","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"15235","refvar":"C","qvar":"T","qpos":"15197","qlength":"29814","protein":"NSP12b","variant":"H590Y","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"18877","refvar":"C","qvar":"T","qpos":"18839","qlength":"29814","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"23403","refvar":"A","qvar":"G","qpos":"23365","qlength":"29814","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"25563","refvar":"G","qvar":"T","qpos":"25525","qlength":"29814","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"26735","refvar":"C","qvar":"T","qpos":"26697","qlength":"29814","protein":"M","variant":"Y71Y","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/Australia/VIC1951/2020|EPI_ISL_480675|2020-06-10","refpos":"27915","refvar":"G","qvar":"T","qpos":"27877","qlength":"29814","protein":"ORF8","variant":"G8*","varclass":"SNP_stop","annotation":"ORF8 protein"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"1163","refvar":"A","qvar":"T","qpos":"1163","qlength":"29903","protein":"NSP2","variant":"I120F","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"7540","refvar":"T","qvar":"C","qpos":"7540","qlength":"29903","protein":"NSP3","variant":"T1607T","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"16647","refvar":"G","qvar":"T","qpos":"16647","qlength":"29903","protein":"NSP13","variant":"T137T","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"18555","refvar":"C","qvar":"T","qpos":"18555","qlength":"29903","protein":"NSP14","variant":"D172D","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"22992","refvar":"G","qvar":"A","qpos":"22992","qlength":"29903","protein":"S","variant":"S477N","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"23401","refvar":"G","qvar":"A","qpos":"23401","qlength":"29903","protein":"S","variant":"Q613Q","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/VIC2121/2020|EPI_ISL_480725|2020-06-18","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Australia/VIC666/2020|EPI_ISL_426962|2020-03-27","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Australia/VIC666/2020|EPI_ISL_426962|2020-03-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/VIC666/2020|EPI_ISL_426962|2020-03-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/VIC666/2020|EPI_ISL_426962|2020-03-27","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Australia/VIC666/2020|EPI_ISL_426962|2020-03-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/VIC666/2020|EPI_ISL_426962|2020-03-27","refpos":"28854","refvar":"C","qvar":"T","qpos":"28854","qlength":"29903","protein":"N","variant":"S194L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"10755","refvar":"C","qvar":"T","qpos":"10755","qlength":"29903","protein":"NSP5","variant":"A234V","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"12854","refvar":"C","qvar":"T","qpos":"12854","qlength":"29903","protein":"NSP9","variant":"P57S","varclass":"SNP","annotation":"ssRNA-binding protein"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"19813","refvar":"C","qvar":"T","qpos":"19813","qlength":"29903","protein":"NSP15","variant":"P65S","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"25587","refvar":"C","qvar":"T","qpos":"25587","qlength":"29903","protein":"ORF3a","variant":"L65L","varclass":"SNP_silent","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Australia/VIC828/2020|EPI_ISL_427096|2020-04-03","refpos":"29745","refvar":"G","qvar":"T","qpos":"29745","qlength":"29903","protein":"3'UTR","variant":"29745","varclass":"extragenic"}
{"sample":"hCoV-19/Australia/WA06/2020|EPI_ISL_420534|2020-03-04","refpos":"241","refvar":"C","qvar":"T","qpos":"141","qlength":"29742","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Australia/WA06/2020|EPI_ISL_420534|2020-03-04","refpos":"1714","refvar":"C","qvar":"T","qpos":"1614","qlength":"29742","protein":"NSP2","variant":"S303S","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Australia/WA06/2020|EPI_ISL_420534|2020-03-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2937","qlength":"29742","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/WA06/2020|EPI_ISL_420534|2020-03-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14308","qlength":"29742","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/WA06/2020|EPI_ISL_420534|2020-03-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23303","qlength":"29742","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/WA06/2020|EPI_ISL_420534|2020-03-04","refpos":"25350","refvar":"C","qvar":"T","qpos":"25250","qlength":"29742","protein":"S","variant":"P1263L","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Austria/CeMM0111/2020|EPI_ISL_437969|2020-03-12","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29884","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Austria/CeMM0111/2020|EPI_ISL_437969|2020-03-12","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29884","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Austria/CeMM0111/2020|EPI_ISL_437969|2020-03-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29884","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Austria/CeMM0111/2020|EPI_ISL_437969|2020-03-12","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29884","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Austria/CeMM0111/2020|EPI_ISL_437969|2020-03-12","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29884","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Austria/CeMM0111/2020|EPI_ISL_437969|2020-03-12","refpos":"29540","refvar":"G","qvar":"T","qpos":"29540","qlength":"29884","protein":"intergenic","variant":"29540","varclass":"extragenic"}
{"sample":"hCoV-19/Austria/CeMM0112/2020|EPI_ISL_437970|2020-03-17","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29873","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Austria/CeMM0112/2020|EPI_ISL_437970|2020-03-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29873","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Austria/CeMM0112/2020|EPI_ISL_437970|2020-03-17","refpos":"4002","refvar":"C","qvar":"T","qpos":"4002","qlength":"29873","protein":"NSP3","variant":"T428I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Austria/CeMM0112/2020|EPI_ISL_437970|2020-03-17","refpos":"10097","refvar":"G","qvar":"A","qpos":"10097","qlength":"29873","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Austria/CeMM0112/2020|EPI_ISL_437970|2020-03-17","refpos":"13536","refvar":"C","qvar":"T","qpos":"13536","qlength":"29873","protein":"NSP12b","variant":"Y23Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Austria/CeMM0112/2020|EPI_ISL_437970|2020-03-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29873","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Austria/CeMM0112/2020|EPI_ISL_437970|2020-03-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29873","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Austria/CeMM0112/2020|EPI_ISL_437970|2020-03-17","refpos":"23731","refvar":"C","qvar":"T","qpos":"23731","qlength":"29873","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Austria/CeMM0112/2020|EPI_ISL_437970|2020-03-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29873","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Austria/CeMM0264/2020|EPI_ISL_438093|2020-03-23","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29893","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Austria/CeMM0264/2020|EPI_ISL_438093|2020-03-23","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29893","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Austria/CeMM0264/2020|EPI_ISL_438093|2020-03-23","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29893","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Austria/CeMM0264/2020|EPI_ISL_438093|2020-03-23","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29893","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Austria/CeMM0264/2020|EPI_ISL_438093|2020-03-23","refpos":"27046","refvar":"C","qvar":"T","qpos":"27046","qlength":"29893","protein":"M","variant":"T175M","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Austria/CeMM0264/2020|EPI_ISL_438093|2020-03-23","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29893","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Austria/CeMM0377/2020|EPI_ISL_475821|2020-03-30","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Austria/CeMM0377/2020|EPI_ISL_475821|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Austria/CeMM0377/2020|EPI_ISL_475821|2020-03-30","refpos":"8293","refvar":"C","qvar":"T","qpos":"8239","qlength":"29782","protein":"NSP3","variant":"T1858T","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Austria/CeMM0377/2020|EPI_ISL_475821|2020-03-30","refpos":"11839","refvar":"A","qvar":"G","qpos":"11785","qlength":"29782","protein":"NSP6","variant":"V289V","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Austria/CeMM0377/2020|EPI_ISL_475821|2020-03-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Austria/CeMM0377/2020|EPI_ISL_475821|2020-03-30","refpos":"16575","refvar":"C","qvar":"T","qpos":"16521","qlength":"29782","protein":"NSP13","variant":"D113D","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/Austria/CeMM0377/2020|EPI_ISL_475821|2020-03-30","refpos":"19839","refvar":"T","qvar":"C","qpos":"19785","qlength":"29782","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Austria/CeMM0377/2020|EPI_ISL_475821|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Austria/CeMM0377/2020|EPI_ISL_475821|2020-03-30","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Austria/CeMM0480/2020|EPI_ISL_475883|2020-03-25","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Austria/CeMM0480/2020|EPI_ISL_475883|2020-03-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Austria/CeMM0480/2020|EPI_ISL_475883|2020-03-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Austria/CeMM0480/2020|EPI_ISL_475883|2020-03-25","refpos":"15324","refvar":"C","qvar":"T","qpos":"15270","qlength":"29782","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Austria/CeMM0480/2020|EPI_ISL_475883|2020-03-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Austria/CeMM0480/2020|EPI_ISL_475883|2020-03-25","refpos":"26754","refvar":"G","qvar":"T","qpos":"26700","qlength":"29782","protein":"M","variant":"G78C","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Belgium/030959/2020|EPI_ISL_420320|2020-03-09","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/030959/2020|EPI_ISL_420320|2020-03-09","refpos":"2094","refvar":"C","qvar":"T","qpos":"2040","qlength":"29782","protein":"NSP2","variant":"S430L","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Belgium/030959/2020|EPI_ISL_420320|2020-03-09","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/030959/2020|EPI_ISL_420320|2020-03-09","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/030959/2020|EPI_ISL_420320|2020-03-09","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/030959/2020|EPI_ISL_420320|2020-03-09","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Belgium/Rega-0328191/2020|EPI_ISL_458161|2020-03-28","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/Rega-0328191/2020|EPI_ISL_458161|2020-03-28","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/Rega-0328191/2020|EPI_ISL_458161|2020-03-28","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/Rega-0328191/2020|EPI_ISL_458161|2020-03-28","refpos":"15277","refvar":"C","qvar":"T","qpos":"15223","qlength":"29782","protein":"NSP12b","variant":"H604Y","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/Rega-0328191/2020|EPI_ISL_458161|2020-03-28","refpos":"15324","refvar":"C","qvar":"T","qpos":"15270","qlength":"29782","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/Rega-0328191/2020|EPI_ISL_458161|2020-03-28","refpos":"17014","refvar":"G","qvar":"T","qpos":"16960","qlength":"29782","protein":"NSP13","variant":"D260Y","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Belgium/Rega-0328191/2020|EPI_ISL_458161|2020-03-28","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/Rega-0329246/2020|EPI_ISL_458216|2020-03-29","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/Rega-0329246/2020|EPI_ISL_458216|2020-03-29","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Belgium/Rega-0329246/2020|EPI_ISL_458216|2020-03-29","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/Rega-0329246/2020|EPI_ISL_458216|2020-03-29","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/Rega-0329246/2020|EPI_ISL_458216|2020-03-29","refpos":"14980","refvar":"C","qvar":"T","qpos":"14926","qlength":"29782","protein":"NSP12b","variant":"L505F","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/Rega-0329246/2020|EPI_ISL_458216|2020-03-29","refpos":"18703","refvar":"G","qvar":"T","qpos":"18649","qlength":"29782","protein":"NSP14","variant":"D222Y","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Belgium/Rega-0329246/2020|EPI_ISL_458216|2020-03-29","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/Rega-0329246/2020|EPI_ISL_458216|2020-03-29","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Belgium/ULG-10013/2020|EPI_ISL_421191|2020-03-14","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/ULG-10013/2020|EPI_ISL_421191|2020-03-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/ULG-10013/2020|EPI_ISL_421191|2020-03-14","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/ULG-10013/2020|EPI_ISL_421191|2020-03-14","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/ULG-10013/2020|EPI_ISL_421191|2020-03-14","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Belgium/ULG-10058/2020|EPI_ISL_424653|2020-04-05","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/ULG-10058/2020|EPI_ISL_424653|2020-04-05","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/ULG-10058/2020|EPI_ISL_424653|2020-04-05","refpos":"4255","refvar":"G","qvar":"T","qpos":"4201","qlength":"29782","protein":"NSP3","variant":"P512P","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/ULG-10058/2020|EPI_ISL_424653|2020-04-05","refpos":"11083","refvar":"G","qvar":"T","qpos":"11029","qlength":"29782","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Belgium/ULG-10058/2020|EPI_ISL_424653|2020-04-05","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/ULG-10058/2020|EPI_ISL_424653|2020-04-05","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/ULG-10058/2020|EPI_ISL_424653|2020-04-05","refpos":"26530","refvar":"A","qvar":"G","qpos":"26476","qlength":"29782","protein":"M","variant":"D3G","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Belgium/ULG-10126/2020|EPI_ISL_427372|2020-04-07","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/ULG-10126/2020|EPI_ISL_427372|2020-04-07","refpos":"2113","refvar":"C","qvar":"T","qpos":"2059","qlength":"29782","protein":"NSP2","variant":"I436I","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Belgium/ULG-10126/2020|EPI_ISL_427372|2020-04-07","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/ULG-10126/2020|EPI_ISL_427372|2020-04-07","refpos":"7765","refvar":"C","qvar":"T","qpos":"7711","qlength":"29782","protein":"NSP3","variant":"S1682S","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/ULG-10126/2020|EPI_ISL_427372|2020-04-07","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/ULG-10126/2020|EPI_ISL_427372|2020-04-07","refpos":"17690","refvar":"C","qvar":"T","qpos":"17636","qlength":"29782","protein":"NSP13","variant":"S485L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Belgium/ULG-10126/2020|EPI_ISL_427372|2020-04-07","refpos":"18877","refvar":"C","qvar":"T","qpos":"18823","qlength":"29782","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Belgium/ULG-10126/2020|EPI_ISL_427372|2020-04-07","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/ULG-10126/2020|EPI_ISL_427372|2020-04-07","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"2113","refvar":"C","qvar":"T","qpos":"2059","qlength":"29782","protein":"NSP2","variant":"I436I","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"4999","refvar":"C","qvar":"T","qpos":"4945","qlength":"29782","protein":"NSP3","variant":"N760N","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"7765","refvar":"C","qvar":"T","qpos":"7711","qlength":"29782","protein":"NSP3","variant":"S1682S","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"17690","refvar":"C","qvar":"T","qpos":"17636","qlength":"29782","protein":"NSP13","variant":"S485L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"18877","refvar":"C","qvar":"T","qpos":"18823","qlength":"29782","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"19524","refvar":"C","qvar":"T","qpos":"19470","qlength":"29782","protein":"NSP14","variant":"L495L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/ULG-10158/2020|EPI_ISL_447153|2020-04-18","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Belgium/ULG-7134/2020|EPI_ISL_418628|2020-03-14","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/ULG-7134/2020|EPI_ISL_418628|2020-03-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/ULG-7134/2020|EPI_ISL_418628|2020-03-14","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/ULG-7134/2020|EPI_ISL_418628|2020-03-14","refpos":"15324","refvar":"C","qvar":"T","qpos":"15270","qlength":"29782","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/ULG-7134/2020|EPI_ISL_418628|2020-03-14","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/VWJM-0324136/2020|EPI_ISL_420393|2020-03-24","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Belgium/VWJM-0324136/2020|EPI_ISL_420393|2020-03-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/VWJM-0324136/2020|EPI_ISL_420393|2020-03-24","refpos":"4002","refvar":"C","qvar":"T","qpos":"3948","qlength":"29782","protein":"NSP3","variant":"T428I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Belgium/VWJM-0324136/2020|EPI_ISL_420393|2020-03-24","refpos":"10097","refvar":"G","qvar":"A","qpos":"10043","qlength":"29782","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Belgium/VWJM-0324136/2020|EPI_ISL_420393|2020-03-24","refpos":"13536","refvar":"C","qvar":"T","qpos":"13482","qlength":"29782","protein":"NSP12b","variant":"Y23Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/VWJM-0324136/2020|EPI_ISL_420393|2020-03-24","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Belgium/VWJM-0324136/2020|EPI_ISL_420393|2020-03-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/VWJM-0324136/2020|EPI_ISL_420393|2020-03-24","refpos":"23731","refvar":"C","qvar":"T","qpos":"23677","qlength":"29782","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Belgium/VWJM-0324136/2020|EPI_ISL_420393|2020-03-24","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Brazil/AP161167-IEC/2020|EPI_ISL_450873|2020-03-17","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Brazil/AP161167-IEC/2020|EPI_ISL_450873|2020-03-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Brazil/AP161167-IEC/2020|EPI_ISL_450873|2020-03-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Brazil/AP161167-IEC/2020|EPI_ISL_450873|2020-03-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Brazil/AP161167-IEC/2020|EPI_ISL_450873|2020-03-17","refpos":"27299","refvar":"T","qvar":"C","qpos":"27299","qlength":"29903","protein":"ORF6","variant":"I33T","varclass":"SNP","annotation":"ORF6 protein"}
{"sample":"hCoV-19/Brazil/AP161167-IEC/2020|EPI_ISL_450873|2020-03-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Brazil/AP161167-IEC/2020|EPI_ISL_450873|2020-03-17","refpos":"29148","refvar":"T","qvar":"C","qpos":"29148","qlength":"29903","protein":"N","variant":"I292T","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"241","refvar":"C","qvar":"T","qpos":"213","qlength":"29752","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"2842","refvar":"C","qvar":"T","qpos":"2814","qlength":"29752","protein":"NSP3","variant":"A41A","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3009","qlength":"29752","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"3984","refvar":"C","qvar":"T","qpos":"3956","qlength":"29752","protein":"NSP3","variant":"T422I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"12202","refvar":"G","qvar":"T","qpos":"12174","qlength":"29752","protein":"NSP8","variant":"K37N","varclass":"SNP","annotation":"Non-Structural protein 8"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14380","qlength":"29752","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"15313","refvar":"G","qvar":"T","qpos":"15285","qlength":"29752","protein":"NSP12b","variant":"A616S","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23375","qlength":"29752","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"27299","refvar":"T","qvar":"C","qpos":"27271","qlength":"29752","protein":"ORF6","variant":"I33T","varclass":"SNP","annotation":"ORF6 protein"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28853","qlength":"29752","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Brazil/RJ-2776/2020|EPI_ISL_467363|2020-04-27","refpos":"29148","refvar":"T","qvar":"C","qpos":"29120","qlength":"29752","protein":"N","variant":"I292T","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"9319","refvar":"C","qvar":"T","qpos":"9319","qlength":"29903","protein":"NSP4","variant":"F255F","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"11595","refvar":"A","qvar":"G","qpos":"11595","qlength":"29903","protein":"NSP6","variant":"Q208R","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"12068","refvar":"C","qvar":"T","qpos":"12068","qlength":"29903","protein":"NSP7","variant":"M75M","varclass":"SNP_silent","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"22021","refvar":"G","qvar":"T","qpos":"22021","qlength":"29903","protein":"S","variant":"M153I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"23767","refvar":"A","qvar":"G","qpos":"23767","qlength":"29903","protein":"S","variant":"S735S","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Bulgaria/27/2020|EPI_ISL_480305|2020-05-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"7798","refvar":"G","qvar":"T","qpos":"7798","qlength":"29903","protein":"NSP3","variant":"K1693N","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"10507","refvar":"C","qvar":"T","qpos":"10507","qlength":"29903","protein":"NSP5","variant":"N151N","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"14931","refvar":"C","qvar":"T","qpos":"14931","qlength":"29903","protein":"NSP12b","variant":"N488N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"18877","refvar":"C","qvar":"T","qpos":"18877","qlength":"29903","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Canada/BC_05941974/2020|EPI_ISL_466794|2020-04","refpos":"28968","refvar":"G","qvar":"T","qpos":"28968","qlength":"29903","protein":"N","variant":"S232I","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"10138","refvar":"C","qvar":"T","qpos":"10138","qlength":"29903","protein":"NSP5","variant":"N28N","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"11916","refvar":"C","qvar":"T","qpos":"11916","qlength":"29903","protein":"NSP7","variant":"S25L","varclass":"SNP","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"18998","refvar":"C","qvar":"T","qpos":"18998","qlength":"29903","protein":"NSP14","variant":"A320V","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"21769","refvar":"T","qvar":"C","qpos":"21769","qlength":"29903","protein":"S","variant":"H69H","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Canada/BC_10404688/2020|EPI_ISL_477079|2020-03","refpos":"29540","refvar":"G","qvar":"A","qpos":"29540","qlength":"29903","protein":"intergenic","variant":"29540","varclass":"extragenic"}
{"sample":"hCoV-19/Canada/BC_10592956/2020|EPI_ISL_467315|2020-04","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Canada/BC_10592956/2020|EPI_ISL_467315|2020-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Canada/BC_10592956/2020|EPI_ISL_467315|2020-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Canada/BC_10592956/2020|EPI_ISL_467315|2020-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Canada/BC_10592956/2020|EPI_ISL_467315|2020-04","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Canada/BC_21461212/2020|EPI_ISL_462814|2020-03","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Canada/BC_21461212/2020|EPI_ISL_462814|2020-03","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Canada/BC_21461212/2020|EPI_ISL_462814|2020-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Canada/BC_21461212/2020|EPI_ISL_462814|2020-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Canada/BC_21461212/2020|EPI_ISL_462814|2020-03","refpos":"15760","refvar":"G","qvar":"A","qpos":"15706","qlength":"29782","protein":"NSP12b","variant":"G765S","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Canada/BC_21461212/2020|EPI_ISL_462814|2020-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Canada/BC_21461212/2020|EPI_ISL_462814|2020-03","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Canada/BC_21993212/2020|EPI_ISL_462820|2020-03","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Canada/BC_21993212/2020|EPI_ISL_462820|2020-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Canada/BC_21993212/2020|EPI_ISL_462820|2020-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Canada/BC_21993212/2020|EPI_ISL_462820|2020-03","refpos":"20268","refvar":"A","qvar":"G","qpos":"20214","qlength":"29782","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Canada/BC_21993212/2020|EPI_ISL_462820|2020-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Canada/QC_AI6/2020|EPI_ISL_476505|2020-04-08","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Canada/QC_AI6/2020|EPI_ISL_476505|2020-04-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Canada/QC_AI6/2020|EPI_ISL_476505|2020-04-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Canada/QC_AI6/2020|EPI_ISL_476505|2020-04-08","refpos":"15324","refvar":"C","qvar":"T","qpos":"15270","qlength":"29782","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Canada/QC_AI6/2020|EPI_ISL_476505|2020-04-08","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Canada/QC_AI6/2020|EPI_ISL_476505|2020-04-08","refpos":"25433","refvar":"C","qvar":"T","qpos":"25379","qlength":"29782","protein":"ORF3a","variant":"T14I","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Chile/Copiapo-00015/2020|EPI_ISL_468757|2020-04-30","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Chile/Copiapo-00015/2020|EPI_ISL_468757|2020-04-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Chile/Copiapo-00015/2020|EPI_ISL_468757|2020-04-30","refpos":"9479","refvar":"G","qvar":"T","qpos":"9479","qlength":"29903","protein":"NSP4","variant":"G309C","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Chile/Copiapo-00015/2020|EPI_ISL_468757|2020-04-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Chile/Copiapo-00015/2020|EPI_ISL_468757|2020-04-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Chile/Copiapo-00015/2020|EPI_ISL_468757|2020-04-30","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Denmark/ALAB-HH-218/2020|EPI_ISL_452069|2020-04-27","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Denmark/ALAB-HH-218/2020|EPI_ISL_452069|2020-04-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Denmark/ALAB-HH-218/2020|EPI_ISL_452069|2020-04-27","refpos":"7834","refvar":"C","qvar":"T","qpos":"7834","qlength":"29903","protein":"NSP3","variant":"N1705N","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Denmark/ALAB-HH-218/2020|EPI_ISL_452069|2020-04-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Denmark/ALAB-HH-218/2020|EPI_ISL_452069|2020-04-27","refpos":"21707","refvar":"C","qvar":"T","qpos":"21707","qlength":"29903","protein":"S","variant":"H49Y","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Denmark/ALAB-HH-218/2020|EPI_ISL_452069|2020-04-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Denmark/ALAB-HH-97/2020|EPI_ISL_452099|2020-03-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Denmark/ALAB-HH-97/2020|EPI_ISL_452099|2020-03-03","refpos":"313","refvar":"C","qvar":"T","qpos":"313","qlength":"29903","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/Denmark/ALAB-HH-97/2020|EPI_ISL_452099|2020-03-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Denmark/ALAB-HH-97/2020|EPI_ISL_452099|2020-03-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Denmark/ALAB-HH-97/2020|EPI_ISL_452099|2020-03-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Denmark/ALAB-HH-97/2020|EPI_ISL_452099|2020-03-03","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Denmark/ALAB-SSI-795/2020|EPI_ISL_444910|2020-03-30","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Denmark/ALAB-SSI-795/2020|EPI_ISL_444910|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Denmark/ALAB-SSI-795/2020|EPI_ISL_444910|2020-03-30","refpos":"7834","refvar":"C","qvar":"T","qpos":"7780","qlength":"29782","protein":"NSP3","variant":"N1705N","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Denmark/ALAB-SSI-795/2020|EPI_ISL_444910|2020-03-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Denmark/ALAB-SSI-795/2020|EPI_ISL_444910|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/20132003204/2020|EPI_ISL_423712|2020-03-22","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/20132003204/2020|EPI_ISL_423712|2020-03-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/20132003204/2020|EPI_ISL_423712|2020-03-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/20132003204/2020|EPI_ISL_423712|2020-03-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/20132003204/2020|EPI_ISL_423712|2020-03-22","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/201361008/2020|EPI_ISL_421785|2020-03-25","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/201361008/2020|EPI_ISL_421785|2020-03-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/201361008/2020|EPI_ISL_421785|2020-03-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/201361008/2020|EPI_ISL_421785|2020-03-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/201361008/2020|EPI_ISL_421785|2020-03-25","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/20166012304/2020|EPI_ISL_466530|2020-04-14","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/20166012304/2020|EPI_ISL_466530|2020-04-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/20166012304/2020|EPI_ISL_466530|2020-04-14","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/20166012304/2020|EPI_ISL_466530|2020-04-14","refpos":"23086","refvar":"C","qvar":"T","qpos":"23086","qlength":"29903","protein":"S","variant":"Y508Y","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/20166012304/2020|EPI_ISL_466530|2020-04-14","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/20166012304/2020|EPI_ISL_466530|2020-04-14","refpos":"27237","refvar":"A","qvar":"G","qpos":"27237","qlength":"29903","protein":"ORF6","variant":"A12A","varclass":"SNP_silent","annotation":"ORF6 protein"}
{"sample":"hCoV-19/England/20166012304/2020|EPI_ISL_466530|2020-04-14","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/20189051801/2020|EPI_ISL_465534|2020-05-01","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/20189051801/2020|EPI_ISL_465534|2020-05-01","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/20189051801/2020|EPI_ISL_465534|2020-05-01","refpos":"5855","refvar":"A","qvar":"G","qpos":"5855","qlength":"29903","protein":"NSP3","variant":"T1046A","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/20189051801/2020|EPI_ISL_465534|2020-05-01","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/20189051801/2020|EPI_ISL_465534|2020-05-01","refpos":"18110","refvar":"C","qvar":"T","qpos":"18110","qlength":"29903","protein":"NSP14","variant":"P24L","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/England/20189051801/2020|EPI_ISL_465534|2020-05-01","refpos":"18115","refvar":"C","qvar":"T","qpos":"18115","qlength":"29903","protein":"NSP14","variant":"H26Y","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/England/20189051801/2020|EPI_ISL_465534|2020-05-01","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/20189051801/2020|EPI_ISL_465534|2020-05-01","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-1234DD/2020|EPI_ISL_442759|2020-04-06","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29777","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-1234DD/2020|EPI_ISL_442759|2020-04-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29777","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-1234DD/2020|EPI_ISL_442759|2020-04-06","refpos":"13201","refvar":"G","qvar":"T","qpos":"13147","qlength":"29777","protein":"NSP10","variant":"P59P","varclass":"SNP_silent","annotation":"Growth-factor-like protein"}
{"sample":"hCoV-19/England/BRIS-1234DD/2020|EPI_ISL_442759|2020-04-06","refpos":"13765","refvar":"G","qvar":"T","qpos":"13711","qlength":"29777","protein":"NSP12b","variant":"D100Y","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-1234DD/2020|EPI_ISL_442759|2020-04-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29777","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-1234DD/2020|EPI_ISL_442759|2020-04-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29777","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-1234DD/2020|EPI_ISL_442759|2020-04-06","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29777","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-1234DD/2020|EPI_ISL_442759|2020-04-06","refpos":"29420","refvar":"C","qvar":"T","qpos":"29366","qlength":"29777","protein":"N","variant":"P383S","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-123631/2020|EPI_ISL_442646|2020-04-06","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-123631/2020|EPI_ISL_442646|2020-04-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-123631/2020|EPI_ISL_442646|2020-04-06","refpos":"6463","refvar":"G","qvar":"T","qpos":"6409","qlength":"29782","protein":"NSP3","variant":"V1248V","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-123631/2020|EPI_ISL_442646|2020-04-06","refpos":"12987","refvar":"T","qvar":"C","qpos":"12933","qlength":"29782","protein":"NSP9","variant":"M101T","varclass":"SNP","annotation":"ssRNA-binding protein"}
{"sample":"hCoV-19/England/BRIS-123631/2020|EPI_ISL_442646|2020-04-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-123631/2020|EPI_ISL_442646|2020-04-06","refpos":"20268","refvar":"A","qvar":"G","qpos":"20214","qlength":"29782","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/England/BRIS-123631/2020|EPI_ISL_442646|2020-04-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12704E/2020|EPI_ISL_469725|2020-04-23","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-12704E/2020|EPI_ISL_469725|2020-04-23","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12704E/2020|EPI_ISL_469725|2020-04-23","refpos":"10097","refvar":"G","qvar":"A","qpos":"10043","qlength":"29782","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12704E/2020|EPI_ISL_469725|2020-04-23","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-12704E/2020|EPI_ISL_469725|2020-04-23","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12704E/2020|EPI_ISL_469725|2020-04-23","refpos":"23731","refvar":"C","qvar":"T","qpos":"23677","qlength":"29782","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12704E/2020|EPI_ISL_469725|2020-04-23","refpos":"24834","refvar":"G","qvar":"A","qpos":"24780","qlength":"29782","protein":"S","variant":"R1091H","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12704E/2020|EPI_ISL_469725|2020-04-23","refpos":"28580","refvar":"G","qvar":"T","qpos":"28526","qlength":"29782","protein":"N","variant":"D103Y","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-12704E/2020|EPI_ISL_469725|2020-04-23","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-1286C3/2020|EPI_ISL_458776|2020-04-14","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29784","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-1286C3/2020|EPI_ISL_458776|2020-04-14","refpos":"873","refvar":"A","qvar":"G","qpos":"819","qlength":"29784","protein":"NSP2","variant":"D23G","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/BRIS-1286C3/2020|EPI_ISL_458776|2020-04-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29784","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-1286C3/2020|EPI_ISL_458776|2020-04-14","refpos":"3877","refvar":"T","qvar":"A","qpos":"3823","qlength":"29784","protein":"NSP3","variant":"A386A","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-1286C3/2020|EPI_ISL_458776|2020-04-14","refpos":"7038","refvar":"G","qvar":"A","qpos":"6984","qlength":"29784","protein":"NSP3","variant":"G1440D","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-1286C3/2020|EPI_ISL_458776|2020-04-14","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29784","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-1286C3/2020|EPI_ISL_458776|2020-04-14","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29784","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-1286C3/2020|EPI_ISL_458776|2020-04-14","refpos":"28250","refvar":".","qvar":"CTG","qpos":"28197","qlength":"29784","protein":"ORF8","variant":"L120","varclass":"insertion","annotation":"ORF8 protein"}
{"sample":"hCoV-19/England/BRIS-1286C3/2020|EPI_ISL_458776|2020-04-14","refpos":"28254","refvar":"A","qvar":".","qpos":"28202","qlength":"29784","protein":"ORF8","variant":"F120","varclass":"deletion_frameshift","annotation":"ORF8 protein"}
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{"sample":"hCoV-19/England/BRIS-12A1B1/2020|EPI_ISL_458457|2020-04-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/BRIS-12B129/2020|EPI_ISL_469809|2020-05-08","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-12B129/2020|EPI_ISL_469809|2020-05-08","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/BRIS-12B129/2020|EPI_ISL_469809|2020-05-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12B129/2020|EPI_ISL_469809|2020-05-08","refpos":"7851","refvar":"C","qvar":"T","qpos":"7797","qlength":"29782","protein":"NSP3","variant":"A1711V","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12B129/2020|EPI_ISL_469809|2020-05-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-12B129/2020|EPI_ISL_469809|2020-05-08","refpos":"20233","refvar":"C","qvar":"T","qpos":"20179","qlength":"29782","protein":"NSP15","variant":"P205S","varclass":"SNP","annotation":"endoRNAse"}
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{"sample":"hCoV-19/England/BRIS-12B36F/2020|EPI_ISL_487547|2020-05-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/BRIS-12B36F/2020|EPI_ISL_487547|2020-05-03","refpos":"7792","refvar":"T","qvar":"C","qpos":"7738","qlength":"29782","protein":"NSP3","variant":"G1691G","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/BRIS-12B36F/2020|EPI_ISL_487547|2020-05-03","refpos":"21724","refvar":"G","qvar":"T","qpos":"21670","qlength":"29782","protein":"S","variant":"L54F","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/BRIS-12B36F/2020|EPI_ISL_487547|2020-05-03","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-12BA79/2020|EPI_ISL_469400|2020-05-17","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29783","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-12BA79/2020|EPI_ISL_469400|2020-05-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29783","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12BA79/2020|EPI_ISL_469400|2020-05-17","refpos":"10097","refvar":"G","qvar":"A","qpos":"10043","qlength":"29783","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12BA79/2020|EPI_ISL_469400|2020-05-17","refpos":"10369","refvar":"C","qvar":"T","qpos":"10315","qlength":"29783","protein":"NSP5","variant":"R105R","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12BA79/2020|EPI_ISL_469400|2020-05-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29783","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-12BA79/2020|EPI_ISL_469400|2020-05-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29783","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12BA79/2020|EPI_ISL_469400|2020-05-17","refpos":"23731","refvar":"C","qvar":"T","qpos":"23677","qlength":"29783","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12BA79/2020|EPI_ISL_469400|2020-05-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29783","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-12FDA9/2020|EPI_ISL_492742|2020-04-10","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-12FDA9/2020|EPI_ISL_492742|2020-04-10","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12FDA9/2020|EPI_ISL_492742|2020-04-10","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-12FDA9/2020|EPI_ISL_492742|2020-04-10","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12FDA9/2020|EPI_ISL_492742|2020-04-10","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-12FF67/2020|EPI_ISL_492519|2020-04-10","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-12FF67/2020|EPI_ISL_492519|2020-04-10","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-12FF67/2020|EPI_ISL_492519|2020-04-10","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-12FF67/2020|EPI_ISL_492519|2020-04-10","refpos":"15257","refvar":"A","qvar":"G","qpos":"15203","qlength":"29782","protein":"NSP12b","variant":"Y597C","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-12FF67/2020|EPI_ISL_492519|2020-04-10","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-12FF67/2020|EPI_ISL_492519|2020-04-10","refpos":"27167","refvar":"C","qvar":"T","qpos":"27113","qlength":"29782","protein":"M","variant":"D215D","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/England/BRIS-12FF67/2020|EPI_ISL_492519|2020-04-10","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/BRIS-130CA8/2020|EPI_ISL_492607|2020-03-22","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-130CA8/2020|EPI_ISL_492607|2020-03-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-130CA8/2020|EPI_ISL_492607|2020-03-22","refpos":"11782","refvar":"A","qvar":"G","qpos":"11728","qlength":"29782","protein":"NSP6","variant":"K270K","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/BRIS-130CA8/2020|EPI_ISL_492607|2020-03-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-130CA8/2020|EPI_ISL_492607|2020-03-22","refpos":"22203","refvar":"G","qvar":"T","qpos":"22149","qlength":"29782","protein":"S","variant":"R214L","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-130CA8/2020|EPI_ISL_492607|2020-03-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-1853267/2020|EPI_ISL_492418|2020-04-02","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/BRIS-1853267/2020|EPI_ISL_492418|2020-04-02","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-1853267/2020|EPI_ISL_492418|2020-04-02","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/BRIS-1853267/2020|EPI_ISL_492418|2020-04-02","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-1853267/2020|EPI_ISL_492418|2020-04-02","refpos":"24077","refvar":"G","qvar":"T","qpos":"24023","qlength":"29782","protein":"S","variant":"D839Y","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-1853267/2020|EPI_ISL_492418|2020-04-02","refpos":"28630","refvar":"T","qvar":"G","qpos":"28576","qlength":"29782","protein":"N","variant":"A119A","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
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{"sample":"hCoV-19/England/CAMB-1AB701/2020|EPI_ISL_444328|2020-04-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-1AB701/2020|EPI_ISL_444328|2020-04-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-1AB701/2020|EPI_ISL_444328|2020-04-27","refpos":"19140","refvar":"C","qvar":"T","qpos":"19140","qlength":"29903","protein":"NSP14","variant":"F367F","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
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{"sample":"hCoV-19/England/CAMB-1B02DB/2020|EPI_ISL_459263|2020-04-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-1B02DB/2020|EPI_ISL_459263|2020-04-30","refpos":"11606","refvar":"C","qvar":"T","qpos":"11552","qlength":"29782","protein":"NSP6","variant":"M211M","varclass":"SNP_silent","annotation":"Transmembrane protein"}
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{"sample":"hCoV-19/England/CAMB-1B0709/2020|EPI_ISL_452913|2020-05-07","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/CAMB-1B3E89/2020|EPI_ISL_492200|2020-05-29","refpos":"1191","refvar":"C","qvar":"T","qpos":"1137","qlength":"29782","protein":"NSP2","variant":"P129L","varclass":"SNP","annotation":"Non-Structural protein 2"}
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{"sample":"hCoV-19/England/CAMB-72A65/2020|EPI_ISL_439937|2020-03-24","refpos":"20268","refvar":"A","qvar":"G","qpos":"20214","qlength":"29782","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
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{"sample":"hCoV-19/England/CAMB-75983/2020|EPI_ISL_438470|2020-03-31","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29783","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-75983/2020|EPI_ISL_438470|2020-03-31","refpos":"11893","refvar":"G","qvar":"T","qpos":"11839","qlength":"29783","protein":"NSP7","variant":"L17F","varclass":"SNP","annotation":"Non-Structural protein 7"}
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{"sample":"hCoV-19/England/CAMB-772E0/2020|EPI_ISL_439487|2020-03-31","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-772E0/2020|EPI_ISL_439487|2020-03-31","refpos":"14120","refvar":"C","qvar":"T","qpos":"14066","qlength":"29782","protein":"NSP12b","variant":"P218L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
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{"sample":"hCoV-19/England/CAMB-779CD/2020|EPI_ISL_439393|2020-03-31","refpos":"2676","refvar":"C","qvar":"T","qpos":"2622","qlength":"29810","protein":"NSP2","variant":"P624L","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/CAMB-779CD/2020|EPI_ISL_439393|2020-03-31","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29810","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/CAMB-78E63/2020|EPI_ISL_470537|2020-04-02","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/CAMB-78E63/2020|EPI_ISL_470537|2020-04-02","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
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{"sample":"hCoV-19/England/CAMB-78E63/2020|EPI_ISL_470537|2020-04-02","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/CAMB-78E63/2020|EPI_ISL_470537|2020-04-02","refpos":"28957","refvar":"C","qvar":"T","qpos":"28903","qlength":"29782","protein":"N","variant":"N228N","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/CAMB-79A9B/2020|EPI_ISL_433818|2020-03-27","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-79A9B/2020|EPI_ISL_433818|2020-03-27","refpos":"1912","refvar":"C","qvar":"T","qpos":"1912","qlength":"29903","protein":"NSP2","variant":"S369S","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/CAMB-79A9B/2020|EPI_ISL_433818|2020-03-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-79A9B/2020|EPI_ISL_433818|2020-03-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-79A9B/2020|EPI_ISL_433818|2020-03-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-79A9B/2020|EPI_ISL_433818|2020-03-27","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/CAMB-7AA8B/2020|EPI_ISL_433833|2020-04-08","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7AA8B/2020|EPI_ISL_433833|2020-04-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7AA8B/2020|EPI_ISL_433833|2020-04-08","refpos":"12091","refvar":"A","qvar":"G","qpos":"12091","qlength":"29903","protein":"intergenic","variant":"12091","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7AA8B/2020|EPI_ISL_433833|2020-04-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7AA8B/2020|EPI_ISL_433833|2020-04-08","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7AA8B/2020|EPI_ISL_433833|2020-04-08","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/CAMB-7AE52/2020|EPI_ISL_433884|2020-04-09","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7AE52/2020|EPI_ISL_433884|2020-04-09","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7AE52/2020|EPI_ISL_433884|2020-04-09","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7AE52/2020|EPI_ISL_433884|2020-04-09","refpos":"14805","refvar":"C","qvar":"T","qpos":"14805","qlength":"29903","protein":"NSP12b","variant":"Y446Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7AE52/2020|EPI_ISL_433884|2020-04-09","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/CAMB-7B194/2020|EPI_ISL_433926|2020-04-10","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7B194/2020|EPI_ISL_433926|2020-04-10","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7B194/2020|EPI_ISL_433926|2020-04-10","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
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{"sample":"hCoV-19/England/CAMB-7B194/2020|EPI_ISL_433926|2020-04-10","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7B194/2020|EPI_ISL_433926|2020-04-10","refpos":"23997","refvar":"C","qvar":"T","qpos":"23997","qlength":"29903","protein":"S","variant":"P812L","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7B194/2020|EPI_ISL_433926|2020-04-10","refpos":"25429","refvar":"G","qvar":"T","qpos":"25429","qlength":"29903","protein":"ORF3a","variant":"V13L","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/CAMB-7B361/2020|EPI_ISL_433945|2020-04-12","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7B361/2020|EPI_ISL_433945|2020-04-12","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7B361/2020|EPI_ISL_433945|2020-04-12","refpos":"8653","refvar":"G","qvar":"T","qpos":"8653","qlength":"29903","protein":"NSP4","variant":"M33I","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/CAMB-7B361/2020|EPI_ISL_433945|2020-04-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7B361/2020|EPI_ISL_433945|2020-04-12","refpos":"21772","refvar":"C","qvar":"T","qpos":"21772","qlength":"29903","protein":"S","variant":"V70V","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7B361/2020|EPI_ISL_433945|2020-04-12","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/CAMB-7B8EA/2020|EPI_ISL_442292|2020-04-04","refpos":"2416","refvar":"C","qvar":"T","qpos":"2362","qlength":"29782","protein":"NSP2","variant":"Y537Y","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/CAMB-7B8EA/2020|EPI_ISL_442292|2020-04-04","refpos":"2591","refvar":"G","qvar":"A","qpos":"2537","qlength":"29782","protein":"NSP2","variant":"A596T","varclass":"SNP","annotation":"Non-Structural protein 2"}
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{"sample":"hCoV-19/England/CAMB-7B8EA/2020|EPI_ISL_442292|2020-04-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7B8EA/2020|EPI_ISL_442292|2020-04-04","refpos":"14786","refvar":"C","qvar":"T","qpos":"14732","qlength":"29782","protein":"NSP12b","variant":"A440V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7B8EA/2020|EPI_ISL_442292|2020-04-04","refpos":"20578","refvar":"G","qvar":"T","qpos":"20524","qlength":"29782","protein":"NSP15","variant":"V320L","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/England/CAMB-7B8EA/2020|EPI_ISL_442292|2020-04-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/CAMB-7B8EA/2020|EPI_ISL_442292|2020-04-04","refpos":"26042","refvar":"C","qvar":"T","qpos":"25988","qlength":"29782","protein":"ORF3a","variant":"T217I","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/CAMB-7C1C0/2020|EPI_ISL_434007|2020","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7C1C0/2020|EPI_ISL_434007|2020","refpos":"1820","refvar":"G","qvar":"A","qpos":"1820","qlength":"29903","protein":"NSP2","variant":"G339S","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/CAMB-7C1C0/2020|EPI_ISL_434007|2020","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7C1C0/2020|EPI_ISL_434007|2020","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7C1C0/2020|EPI_ISL_434007|2020","refpos":"16881","refvar":"A","qvar":"G","qpos":"16881","qlength":"29903","protein":"NSP13","variant":"T215T","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/England/CAMB-7C1C0/2020|EPI_ISL_434007|2020","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7C1C0/2020|EPI_ISL_434007|2020","refpos":"26942","refvar":"C","qvar":"T","qpos":"26942","qlength":"29903","protein":"M","variant":"I140I","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/England/CAMB-7C1C0/2020|EPI_ISL_434007|2020","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
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{"sample":"hCoV-19/England/CAMB-7D0E0/2020|EPI_ISL_441549|2020-04-06","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/CAMB-7D0E0/2020|EPI_ISL_441549|2020-04-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7D0E0/2020|EPI_ISL_441549|2020-04-06","refpos":"8334","refvar":"C","qvar":"T","qpos":"8280","qlength":"29782","protein":"NSP3","variant":"A1872V","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7D0E0/2020|EPI_ISL_441549|2020-04-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7D0E0/2020|EPI_ISL_441549|2020-04-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7D0E0/2020|EPI_ISL_441549|2020-04-06","refpos":"24368","refvar":"G","qvar":"T","qpos":"24314","qlength":"29782","protein":"S","variant":"D936Y","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7D0E0/2020|EPI_ISL_441549|2020-04-06","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/CAMB-7D790/2020|EPI_ISL_442340|2020-04-06","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29783","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7D790/2020|EPI_ISL_442340|2020-04-06","refpos":"2164","refvar":"G","qvar":"A","qpos":"2110","qlength":"29783","protein":"NSP2","variant":"E453E","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/CAMB-7D790/2020|EPI_ISL_442340|2020-04-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29783","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7D790/2020|EPI_ISL_442340|2020-04-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29783","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7D790/2020|EPI_ISL_442340|2020-04-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29783","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7D790/2020|EPI_ISL_442340|2020-04-06","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29783","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/CAMB-7EB2A/2020|EPI_ISL_443048|2020-04-07","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7EB2A/2020|EPI_ISL_443048|2020-04-07","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7EB2A/2020|EPI_ISL_443048|2020-04-07","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7EB2A/2020|EPI_ISL_443048|2020-04-07","refpos":"15324","refvar":"C","qvar":"T","qpos":"15270","qlength":"29782","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7EB2A/2020|EPI_ISL_443048|2020-04-07","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7EB2A/2020|EPI_ISL_443048|2020-04-07","refpos":"29730","refvar":"CACCGAGGCCACGCGGAGTACGATCGAGTG","qvar":".","qpos":"29675","qlength":"29782","protein":"3'UTR","variant":"29730","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7FBED/2020|EPI_ISL_444397|2020-04-16","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7FBED/2020|EPI_ISL_444397|2020-04-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-7FBED/2020|EPI_ISL_444397|2020-04-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7FBED/2020|EPI_ISL_444397|2020-04-16","refpos":"14805","refvar":"C","qvar":"T","qpos":"14805","qlength":"29903","protein":"NSP12b","variant":"Y446Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7FBED/2020|EPI_ISL_444397|2020-04-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-7FBED/2020|EPI_ISL_444397|2020-04-16","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/CAMB-80CB9/2020|EPI_ISL_442954|2020-04-04","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-80CB9/2020|EPI_ISL_442954|2020-04-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/CAMB-80CB9/2020|EPI_ISL_442954|2020-04-04","refpos":"14120","refvar":"C","qvar":"T","qpos":"14066","qlength":"29782","protein":"NSP12b","variant":"P218L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-80CB9/2020|EPI_ISL_442954|2020-04-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-80CB9/2020|EPI_ISL_442954|2020-04-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/CAMB-80CB9/2020|EPI_ISL_442954|2020-04-04","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/EXET-135405/2020|EPI_ISL_457057|2020-04-15","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/EXET-135405/2020|EPI_ISL_457057|2020-04-15","refpos":"678","refvar":"C","qvar":"T","qpos":"678","qlength":"29903","protein":"NSP1","variant":"A138V","varclass":"SNP","annotation":"Leader protein"}
{"sample":"hCoV-19/England/EXET-135405/2020|EPI_ISL_457057|2020-04-15","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/EXET-135405/2020|EPI_ISL_457057|2020-04-15","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/EXET-135405/2020|EPI_ISL_457057|2020-04-15","refpos":"18859","refvar":"G","qvar":"T","qpos":"18859","qlength":"29903","protein":"NSP14","variant":"A274S","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/England/EXET-135405/2020|EPI_ISL_457057|2020-04-15","refpos":"21624","refvar":"G","qvar":"T","qpos":"21624","qlength":"29903","protein":"S","variant":"R21I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/EXET-135405/2020|EPI_ISL_457057|2020-04-15","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/EXET-135405/2020|EPI_ISL_457057|2020-04-15","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/EXET-136A7B/2020|EPI_ISL_457245|2020-04-27","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/EXET-136A7B/2020|EPI_ISL_457245|2020-04-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/EXET-136A7B/2020|EPI_ISL_457245|2020-04-27","refpos":"4784","refvar":"C","qvar":"T","qpos":"4784","qlength":"29903","protein":"NSP3","variant":"L689F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/EXET-136A7B/2020|EPI_ISL_457245|2020-04-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/EXET-136A7B/2020|EPI_ISL_457245|2020-04-27","refpos":"19839","refvar":"T","qvar":"C","qpos":"19839","qlength":"29903","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/England/EXET-136A7B/2020|EPI_ISL_457245|2020-04-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/EXET-13710C/2020|EPI_ISL_471950|2020-04-20","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/EXET-13710C/2020|EPI_ISL_471950|2020-04-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/EXET-13710C/2020|EPI_ISL_471950|2020-04-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/EXET-13710C/2020|EPI_ISL_471950|2020-04-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/GSTT-265E070/2020|EPI_ISL_484145|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29611","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/GSTT-265E070/2020|EPI_ISL_484145|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29611","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/HECH-259A273/2020|EPI_ISL_488844|2020-05-26","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/HECH-259A273/2020|EPI_ISL_488844|2020-05-26","refpos":"2005","refvar":"C","qvar":"T","qpos":"1951","qlength":"29782","protein":"NSP2","variant":"L400L","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/HECH-259A273/2020|EPI_ISL_488844|2020-05-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/HECH-259A273/2020|EPI_ISL_488844|2020-05-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/LCST-24D67C8/2020|EPI_ISL_478294|2020-05-30","refpos":"1874","refvar":"G","qvar":"T","qpos":"1820","qlength":"29780","protein":"NSP2","variant":"A357S","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/LCST-24D67C8/2020|EPI_ISL_478294|2020-05-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29780","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/LCST-24D67C8/2020|EPI_ISL_478294|2020-05-30","refpos":"8683","refvar":"C","qvar":"T","qpos":"8629","qlength":"29780","protein":"NSP4","variant":"I43I","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/LCST-24D67C8/2020|EPI_ISL_478294|2020-05-30","refpos":"11083","refvar":"G","qvar":"T","qpos":"11029","qlength":"29780","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/LCST-24D67C8/2020|EPI_ISL_478294|2020-05-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29780","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
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{"sample":"hCoV-19/England/LOND-D4A70/2020|EPI_ISL_444174|2020-04-11","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/LOND-D4A70/2020|EPI_ISL_444174|2020-04-11","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/LOND-D570F/2020|EPI_ISL_453460|2020-04-17","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/LOND-D570F/2020|EPI_ISL_453460|2020-04-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/LOND-D570F/2020|EPI_ISL_453460|2020-04-17","refpos":"21575","refvar":"C","qvar":"T","qpos":"21575","qlength":"29903","protein":"S","variant":"L5F","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/LOND-D5A42/2020|EPI_ISL_457293|2020-04-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/LOND-D5A42/2020|EPI_ISL_457293|2020-04-16","refpos":"3234","refvar":"A","qvar":"G","qpos":"3234","qlength":"29903","protein":"NSP3","variant":"Q172R","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/LOND-D5A42/2020|EPI_ISL_457293|2020-04-16","refpos":"4946","refvar":"T","qvar":"G","qpos":"4946","qlength":"29903","protein":"NSP3","variant":"S743A","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/LOND-D5A42/2020|EPI_ISL_457293|2020-04-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/LOND-D5A42/2020|EPI_ISL_457293|2020-04-16","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/LOND-D5A42/2020|EPI_ISL_457293|2020-04-16","refpos":"29281","refvar":"C","qvar":"T","qpos":"29281","qlength":"29903","protein":"N","variant":"A336A","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
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{"sample":"hCoV-19/England/LOND-D6E45/2020|EPI_ISL_478438|2020-04-02","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29760","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/LOND-D6E45/2020|EPI_ISL_478438|2020-04-02","refpos":"4285","refvar":"G","qvar":"T","qpos":"4231","qlength":"29760","protein":"NSP3","variant":"E522D","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/LOND-D6E45/2020|EPI_ISL_478438|2020-04-02","refpos":"10948","refvar":"A","qvar":"G","qpos":"10894","qlength":"29760","protein":"NSP5","variant":"R298R","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/LOND-D6E45/2020|EPI_ISL_478438|2020-04-02","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29760","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
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{"sample":"hCoV-19/England/LOND-D7257/2020|EPI_ISL_478466|2020-04-11","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29760","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/LOND-D7257/2020|EPI_ISL_478466|2020-04-11","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29760","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/LOND-D7257/2020|EPI_ISL_478466|2020-04-11","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29760","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NORT-28258D/2020|EPI_ISL_488670|2020-03-26","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NORT-28258D/2020|EPI_ISL_488670|2020-03-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORT-28258D/2020|EPI_ISL_488670|2020-03-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NORT-28258D/2020|EPI_ISL_488670|2020-03-26","refpos":"20268","refvar":"A","qvar":"G","qpos":"20214","qlength":"29782","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/England/NORT-28258D/2020|EPI_ISL_488670|2020-03-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NORT-28258D/2020|EPI_ISL_488670|2020-03-26","refpos":"26447","refvar":"C","qvar":"T","qpos":"26393","qlength":"29782","protein":"E","variant":"S68F","varclass":"SNP","annotation":"Envelope"}
{"sample":"hCoV-19/England/NORT-283AF6/2020|EPI_ISL_488547|2020-04-03","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NORT-283AF6/2020|EPI_ISL_488547|2020-04-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORT-283AF6/2020|EPI_ISL_488547|2020-04-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NORT-283AF6/2020|EPI_ISL_488547|2020-04-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/NORT-283AF6/2020|EPI_ISL_488547|2020-04-03","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
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{"sample":"hCoV-19/England/NORT-289164/2020|EPI_ISL_458678|2020-03-27","refpos":"2232","refvar":"C","qvar":"T","qpos":"2178","qlength":"29782","protein":"NSP2","variant":"A476V","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/NORT-289164/2020|EPI_ISL_458678|2020-03-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORT-289164/2020|EPI_ISL_458678|2020-03-27","refpos":"6843","refvar":"C","qvar":"T","qpos":"6789","qlength":"29782","protein":"NSP3","variant":"S1375F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORT-289164/2020|EPI_ISL_458678|2020-03-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NORT-289164/2020|EPI_ISL_458678|2020-03-27","refpos":"21405","refvar":"A","qvar":"T","qpos":"21351","qlength":"29782","protein":"NSP16","variant":"K249N","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/England/NORT-289164/2020|EPI_ISL_458678|2020-03-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/NORT-28C40E/2020|EPI_ISL_492926|2020-05-14","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NORT-28C40E/2020|EPI_ISL_492926|2020-05-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/NORT-28C40E/2020|EPI_ISL_492926|2020-05-14","refpos":"21220","refvar":"G","qvar":"T","qpos":"21166","qlength":"29782","protein":"NSP16","variant":"A188S","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
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{"sample":"hCoV-19/England/NORT-292414/2020|EPI_ISL_489144|2020-05-04","refpos":"16616","refvar":"C","qvar":"T","qpos":"16562","qlength":"29782","protein":"NSP13","variant":"T127I","varclass":"SNP","annotation":"Helicase"}
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{"sample":"hCoV-19/England/NORT-292414/2020|EPI_ISL_489144|2020-05-04","refpos":"28580","refvar":"G","qvar":"T","qpos":"28526","qlength":"29782","protein":"N","variant":"D103Y","varclass":"SNP","annotation":"Nucleocapsid protein"}
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{"sample":"hCoV-19/England/NORT-292881/2020|EPI_ISL_489076|2020-05-30","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NORT-292881/2020|EPI_ISL_489076|2020-05-30","refpos":"1687","refvar":"C","qvar":"T","qpos":"1633","qlength":"29782","protein":"NSP2","variant":"A294A","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/NORT-292881/2020|EPI_ISL_489076|2020-05-30","refpos":"2306","refvar":"C","qvar":"T","qpos":"2252","qlength":"29782","protein":"NSP2","variant":"L501F","varclass":"SNP","annotation":"Non-Structural protein 2"}
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{"sample":"hCoV-19/England/NORW-E8077/2020|EPI_ISL_449101|2020-04-14","refpos":"313","refvar":"C","qvar":"T","qpos":"313","qlength":"29903","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/England/NORW-E8077/2020|EPI_ISL_449101|2020-04-14","refpos":"1820","refvar":"G","qvar":"A","qpos":"1820","qlength":"29903","protein":"NSP2","variant":"G339S","varclass":"SNP","annotation":"Non-Structural protein 2"}
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{"sample":"hCoV-19/England/NORW-E8CA0/2020|EPI_ISL_448297|2020-04-14","refpos":"241","refvar":"C","qvar":"T","qpos":"211","qlength":"29873","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NORW-E8CA0/2020|EPI_ISL_448297|2020-04-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"3007","qlength":"29873","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/NORW-E8CA0/2020|EPI_ISL_448297|2020-04-14","refpos":"24232","refvar":"A","qvar":"G","qpos":"24202","qlength":"29873","protein":"S","variant":"A890A","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/NORW-E8CA0/2020|EPI_ISL_448297|2020-04-14","refpos":"25429","refvar":"G","qvar":"T","qpos":"25399","qlength":"29873","protein":"ORF3a","variant":"V13L","varclass":"SNP","annotation":"ORF3a protein"}
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{"sample":"hCoV-19/England/NORW-E8EF5/2020|EPI_ISL_453563|2020-04-24","refpos":"2940","refvar":"C","qvar":"T","qpos":"2938","qlength":"29901","protein":"NSP3","variant":"P74L","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORW-E8EF5/2020|EPI_ISL_453563|2020-04-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"3035","qlength":"29901","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/NORW-E8EF5/2020|EPI_ISL_453563|2020-04-24","refpos":"18677","refvar":"G","qvar":"T","qpos":"18675","qlength":"29901","protein":"NSP14","variant":"R213L","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
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{"sample":"hCoV-19/England/NORW-E8EF5/2020|EPI_ISL_453563|2020-04-24","refpos":"27874","refvar":"C","qvar":"T","qpos":"27872","qlength":"29901","protein":"ORF7b","variant":"T40I","varclass":"SNP","annotation":"ORF7b protein"}
{"sample":"hCoV-19/England/NORW-E9ED6/2020|EPI_ISL_448379|2020-05-01","refpos":"241","refvar":"C","qvar":"T","qpos":"203","qlength":"29865","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NORW-E9ED6/2020|EPI_ISL_448379|2020-05-01","refpos":"2775","refvar":"A","qvar":"G","qpos":"2737","qlength":"29865","protein":"NSP3","variant":"K19R","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORW-E9ED6/2020|EPI_ISL_448379|2020-05-01","refpos":"2940","refvar":"C","qvar":"T","qpos":"2902","qlength":"29865","protein":"NSP3","variant":"P74L","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORW-E9ED6/2020|EPI_ISL_448379|2020-05-01","refpos":"3037","refvar":"C","qvar":"T","qpos":"2999","qlength":"29865","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORW-E9ED6/2020|EPI_ISL_448379|2020-05-01","refpos":"14408","refvar":"C","qvar":"T","qpos":"14370","qlength":"29865","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NORW-E9ED6/2020|EPI_ISL_448379|2020-05-01","refpos":"21648","refvar":"C","qvar":"T","qpos":"21610","qlength":"29865","protein":"S","variant":"T29I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NORW-E9ED6/2020|EPI_ISL_448379|2020-05-01","refpos":"23403","refvar":"A","qvar":"G","qpos":"23365","qlength":"29865","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NORW-EC40E/2020|EPI_ISL_457523|2020-05-12","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NORW-EC40E/2020|EPI_ISL_457523|2020-05-12","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORW-EC40E/2020|EPI_ISL_457523|2020-05-12","refpos":"12915","refvar":"C","qvar":"T","qpos":"12915","qlength":"29903","protein":"NSP9","variant":"T77I","varclass":"SNP","annotation":"ssRNA-binding protein"}
{"sample":"hCoV-19/England/NORW-EC40E/2020|EPI_ISL_457523|2020-05-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NORW-EC40E/2020|EPI_ISL_457523|2020-05-12","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/England/NORW-EC40E/2020|EPI_ISL_457523|2020-05-12","refpos":"21255","refvar":"G","qvar":"T","qpos":"21255","qlength":"29903","protein":"NSP16","variant":"A199A","varclass":"SNP_silent","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/England/NORW-EC40E/2020|EPI_ISL_457523|2020-05-12","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NOTT-10E283/2020|EPI_ISL_425519|2020-03-20","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NOTT-10E283/2020|EPI_ISL_425519|2020-03-20","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/NOTT-10E283/2020|EPI_ISL_425519|2020-03-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NOTT-10E283/2020|EPI_ISL_425519|2020-03-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NOTT-10E283/2020|EPI_ISL_425519|2020-03-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NOTT-10E283/2020|EPI_ISL_425519|2020-03-20","refpos":"24368","refvar":"G","qvar":"T","qpos":"24368","qlength":"29903","protein":"S","variant":"D936Y","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NOTT-10E283/2020|EPI_ISL_425519|2020-03-20","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/NOTT-10F98D/2020|EPI_ISL_433066|2020-04-05","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NOTT-10F98D/2020|EPI_ISL_433066|2020-04-05","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NOTT-10F98D/2020|EPI_ISL_433066|2020-04-05","refpos":"10440","refvar":"C","qvar":"T","qpos":"10440","qlength":"29903","protein":"NSP5","variant":"A129V","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/NOTT-10F98D/2020|EPI_ISL_433066|2020-04-05","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NOTT-10F98D/2020|EPI_ISL_433066|2020-04-05","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NOTT-10F98D/2020|EPI_ISL_433066|2020-04-05","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"1862","refvar":"C","qvar":"T","qpos":"1862","qlength":"29903","protein":"NSP2","variant":"L353F","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"4002","refvar":"C","qvar":"T","qpos":"4002","qlength":"29903","protein":"NSP3","variant":"T428I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"10097","refvar":"G","qvar":"A","qpos":"10097","qlength":"29903","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"11083","refvar":"G","qvar":"T","qpos":"11083","qlength":"29903","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"13536","refvar":"C","qvar":"T","qpos":"13536","qlength":"29903","protein":"NSP12b","variant":"Y23Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"23731","refvar":"C","qvar":"T","qpos":"23731","qlength":"29903","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"24872","refvar":"G","qvar":"T","qpos":"24872","qlength":"29903","protein":"S","variant":"V1104L","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NOTT-111803/2020|EPI_ISL_461928|2020-05-21","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"274","refvar":"C","qvar":"T","qpos":"274","qlength":"29903","protein":"NSP1","variant":"S3S","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"6312","refvar":"C","qvar":"A","qpos":"6312","qlength":"29903","protein":"NSP3","variant":"T1198K","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"10948","refvar":"A","qvar":"G","qpos":"10948","qlength":"29903","protein":"NSP5","variant":"R298R","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"12075","refvar":"A","qvar":"G","qpos":"12075","qlength":"29903","protein":"NSP7","variant":"N78S","varclass":"SNP","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"25552","refvar":"G","qvar":"T","qpos":"25552","qlength":"29903","protein":"ORF3a","variant":"A54S","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/NOTT-11188B/2020|EPI_ISL_461934|2020-05-22","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/OXON-ACCB7/2020|EPI_ISL_448525|2020-04-05","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/OXON-ACCB7/2020|EPI_ISL_448525|2020-04-05","refpos":"1537","refvar":"T","qvar":"C","qpos":"1537","qlength":"29903","protein":"NSP2","variant":"V244V","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/OXON-ACCB7/2020|EPI_ISL_448525|2020-04-05","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-ACCB7/2020|EPI_ISL_448525|2020-04-05","refpos":"10097","refvar":"G","qvar":"A","qpos":"10097","qlength":"29903","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/OXON-ACCB7/2020|EPI_ISL_448525|2020-04-05","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/OXON-ACCB7/2020|EPI_ISL_448525|2020-04-05","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-ACCB7/2020|EPI_ISL_448525|2020-04-05","refpos":"23731","refvar":"C","qvar":"T","qpos":"23731","qlength":"29903","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-ACCB7/2020|EPI_ISL_448525|2020-04-05","refpos":"28580","refvar":"G","qvar":"T","qpos":"28580","qlength":"29903","protein":"N","variant":"D103Y","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/OXON-ACCB7/2020|EPI_ISL_448525|2020-04-05","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/OXON-AE0B9/2020|EPI_ISL_448661|2020","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/OXON-AE0B9/2020|EPI_ISL_448661|2020","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-AE0B9/2020|EPI_ISL_448661|2020","refpos":"4999","refvar":"C","qvar":"T","qpos":"4999","qlength":"29903","protein":"NSP3","variant":"N760N","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-AE0B9/2020|EPI_ISL_448661|2020","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/OXON-AE0B9/2020|EPI_ISL_448661|2020","refpos":"21575","refvar":"C","qvar":"T","qpos":"21575","qlength":"29903","protein":"S","variant":"L5F","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-AE0B9/2020|EPI_ISL_448661|2020","refpos":"23236","refvar":"G","qvar":"T","qpos":"23236","qlength":"29903","protein":"S","variant":"K558N","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-AE0B9/2020|EPI_ISL_448661|2020","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-AE0B9/2020|EPI_ISL_448661|2020","refpos":"26058","refvar":"C","qvar":"T","qpos":"26058","qlength":"29903","protein":"ORF3a","variant":"D222D","varclass":"SNP_silent","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/OXON-AE0B9/2020|EPI_ISL_448661|2020","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/OXON-AE110/2020|EPI_ISL_448664|2020","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/OXON-AE110/2020|EPI_ISL_448664|2020","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-AE110/2020|EPI_ISL_448664|2020","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/OXON-AE110/2020|EPI_ISL_448664|2020","refpos":"19102","refvar":"C","qvar":"T","qpos":"19102","qlength":"29903","protein":"NSP14","variant":"P355S","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/England/OXON-AE110/2020|EPI_ISL_448664|2020","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-AE110/2020|EPI_ISL_448664|2020","refpos":"24038","refvar":"G","qvar":"T","qpos":"24038","qlength":"29903","protein":"S","variant":"V826L","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-AE110/2020|EPI_ISL_448664|2020","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/OXON-B0A89/2020|EPI_ISL_478932|2020-04-17","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29872","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/OXON-B0A89/2020|EPI_ISL_478932|2020-04-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29872","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-B0A89/2020|EPI_ISL_478932|2020-04-17","refpos":"6393","refvar":"A","qvar":"C","qpos":"6393","qlength":"29872","protein":"NSP3","variant":"D1225A","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-B0A89/2020|EPI_ISL_478932|2020-04-17","refpos":"11801","refvar":"G","qvar":"A","qpos":"11801","qlength":"29872","protein":"NSP6","variant":"G277S","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/OXON-B0A89/2020|EPI_ISL_478932|2020-04-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29872","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/OXON-B0A89/2020|EPI_ISL_478932|2020-04-17","refpos":"18831","refvar":"T","qvar":"C","qpos":"18831","qlength":"29872","protein":"NSP14","variant":"H264H","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/England/OXON-B0A89/2020|EPI_ISL_478932|2020-04-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29872","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-B0A89/2020|EPI_ISL_478932|2020-04-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29872","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"313","refvar":"C","qvar":"T","qpos":"313","qlength":"29903","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"3552","refvar":"C","qvar":"T","qpos":"3552","qlength":"29903","protein":"NSP3","variant":"P278L","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"4109","refvar":"G","qvar":"A","qpos":"4109","qlength":"29903","protein":"NSP3","variant":"D464N","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"8090","refvar":"C","qvar":"T","qpos":"8090","qlength":"29903","protein":"NSP3","variant":"L1791F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"25456","refvar":"G","qvar":"T","qpos":"25456","qlength":"29903","protein":"ORF3a","variant":"D22Y","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/OXON-B0B86/2020|EPI_ISL_478939|2020-04-22","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/OXON-B151E/2020|EPI_ISL_479024|2020","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/OXON-B151E/2020|EPI_ISL_479024|2020","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/OXON-B151E/2020|EPI_ISL_479024|2020","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/OXON-B151E/2020|EPI_ISL_479024|2020","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/OXON-B151E/2020|EPI_ISL_479024|2020","refpos":"25429","refvar":"G","qvar":"T","qpos":"25429","qlength":"29903","protein":"ORF3a","variant":"V13L","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/OXON-B151E/2020|EPI_ISL_479024|2020","refpos":"26461","refvar":"C","qvar":"T","qpos":"26461","qlength":"29903","protein":"E","variant":"L73F","varclass":"SNP","annotation":"Envelope"}
{"sample":"hCoV-19/England/PORT-2CF6CD/2020|EPI_ISL_461974|2020-05-12","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/PORT-2CF6CD/2020|EPI_ISL_461974|2020-05-12","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/PORT-2CF6CD/2020|EPI_ISL_461974|2020-05-12","refpos":"9857","refvar":"C","qvar":"T","qpos":"9857","qlength":"29903","protein":"NSP4","variant":"V434V","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/PORT-2CF6CD/2020|EPI_ISL_461974|2020-05-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/PORT-2CF6CD/2020|EPI_ISL_461974|2020-05-12","refpos":"16887","refvar":"C","qvar":"T","qpos":"16887","qlength":"29903","protein":"NSP13","variant":"Y217Y","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/England/PORT-2CF6CD/2020|EPI_ISL_461974|2020-05-12","refpos":"21292","refvar":"C","qvar":"T","qpos":"21292","qlength":"29903","protein":"NSP16","variant":"L212F","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/England/PORT-2CF6CD/2020|EPI_ISL_461974|2020-05-12","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/PORT-2CF6CD/2020|EPI_ISL_461974|2020-05-12","refpos":"26530","refvar":"A","qvar":"G","qpos":"26530","qlength":"29903","protein":"M","variant":"D3G","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/England/PORT-2CFB19/2020|EPI_ISL_493626|2020-05-18","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/PORT-2CFB19/2020|EPI_ISL_493626|2020-05-18","refpos":"2113","refvar":"C","qvar":"T","qpos":"2059","qlength":"29782","protein":"NSP2","variant":"I436I","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/PORT-2CFB19/2020|EPI_ISL_493626|2020-05-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/PORT-2CFB19/2020|EPI_ISL_493626|2020-05-18","refpos":"9857","refvar":"C","qvar":"T","qpos":"9803","qlength":"29782","protein":"NSP4","variant":"V434V","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/PORT-2CFB19/2020|EPI_ISL_493626|2020-05-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/PORT-2CFB19/2020|EPI_ISL_493626|2020-05-18","refpos":"16887","refvar":"C","qvar":"T","qpos":"16833","qlength":"29782","protein":"NSP13","variant":"Y217Y","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/England/PORT-2CFB19/2020|EPI_ISL_493626|2020-05-18","refpos":"21292","refvar":"C","qvar":"T","qpos":"21238","qlength":"29782","protein":"NSP16","variant":"L212F","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/England/PORT-2CFB19/2020|EPI_ISL_493626|2020-05-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/PORT-2CFB19/2020|EPI_ISL_493626|2020-05-18","refpos":"26530","refvar":"A","qvar":"G","qpos":"26476","qlength":"29782","protein":"M","variant":"D3G","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/England/SHEF-C01CD/2020|EPI_ISL_420229|2020-03-26","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-C01CD/2020|EPI_ISL_420229|2020-03-26","refpos":"313","refvar":"C","qvar":"T","qpos":"259","qlength":"29782","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/England/SHEF-C01CD/2020|EPI_ISL_420229|2020-03-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C01CD/2020|EPI_ISL_420229|2020-03-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-C01CD/2020|EPI_ISL_420229|2020-03-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C01CD/2020|EPI_ISL_420229|2020-03-26","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/SHEF-C04B5/2020|EPI_ISL_420202|2020-03-29","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-C04B5/2020|EPI_ISL_420202|2020-03-29","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C04B5/2020|EPI_ISL_420202|2020-03-29","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-C04B5/2020|EPI_ISL_420202|2020-03-29","refpos":"18713","refvar":"C","qvar":"T","qpos":"18659","qlength":"29782","protein":"NSP14","variant":"A225V","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/England/SHEF-C04B5/2020|EPI_ISL_420202|2020-03-29","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C04B5/2020|EPI_ISL_420202|2020-03-29","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/SHEF-C1D22/2020|EPI_ISL_448836|2020-04-17","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-C1D22/2020|EPI_ISL_448836|2020-04-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C1D22/2020|EPI_ISL_448836|2020-04-17","refpos":"5777","refvar":"C","qvar":"T","qpos":"5723","qlength":"29782","protein":"NSP3","variant":"H1020Y","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C1D22/2020|EPI_ISL_448836|2020-04-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-C1D22/2020|EPI_ISL_448836|2020-04-17","refpos":"19839","refvar":"T","qvar":"C","qpos":"19785","qlength":"29782","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/England/SHEF-C1D22/2020|EPI_ISL_448836|2020-04-17","refpos":"22207","refvar":"T","qvar":"C","qpos":"22153","qlength":"29782","protein":"S","variant":"D215D","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C1D22/2020|EPI_ISL_448836|2020-04-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C1D22/2020|EPI_ISL_448836|2020-04-17","refpos":"26681","refvar":"C","qvar":"T","qpos":"26627","qlength":"29782","protein":"M","variant":"F53F","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/England/SHEF-C1D22/2020|EPI_ISL_448836|2020-04-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/SHEF-C2AC0/2020|EPI_ISL_453701|2020-04-23","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-C2AC0/2020|EPI_ISL_453701|2020-04-23","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C2AC0/2020|EPI_ISL_453701|2020-04-23","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-C2AC0/2020|EPI_ISL_453701|2020-04-23","refpos":"17367","refvar":"A","qvar":"T","qpos":"17313","qlength":"29782","protein":"NSP13","variant":"S377S","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/England/SHEF-C2AC0/2020|EPI_ISL_453701|2020-04-23","refpos":"22427","refvar":"G","qvar":"A","qpos":"22373","qlength":"29782","protein":"S","variant":"V289I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C2AC0/2020|EPI_ISL_453701|2020-04-23","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C2AC0/2020|EPI_ISL_453701|2020-04-23","refpos":"27441","refvar":"G","qvar":"T","qpos":"27387","qlength":"29782","protein":"ORF7a","variant":"E16D","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/England/SHEF-C2AC0/2020|EPI_ISL_453701|2020-04-23","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"3421","refvar":"A","qvar":"G","qpos":"3367","qlength":"29782","protein":"NSP3","variant":"V234V","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"4002","refvar":"C","qvar":"T","qpos":"3948","qlength":"29782","protein":"NSP3","variant":"T428I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"6622","refvar":"G","qvar":"T","qpos":"6568","qlength":"29782","protein":"NSP3","variant":"L1301F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"10097","refvar":"G","qvar":"A","qpos":"10043","qlength":"29782","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"13536","refvar":"C","qvar":"T","qpos":"13482","qlength":"29782","protein":"NSP12b","variant":"Y23Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"23731","refvar":"C","qvar":"T","qpos":"23677","qlength":"29782","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C3B71/2020|EPI_ISL_462011|2020-04-18","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"10097","refvar":"G","qvar":"A","qpos":"10043","qlength":"29782","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"11750","refvar":"C","qvar":"T","qpos":"11696","qlength":"29782","protein":"NSP6","variant":"L260F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"13381","refvar":"C","qvar":"T","qpos":"13327","qlength":"29782","protein":"NSP10","variant":"V119V","varclass":"SNP_silent","annotation":"Growth-factor-like protein"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"23731","refvar":"C","qvar":"T","qpos":"23677","qlength":"29782","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"23992","refvar":"A","qvar":"T","qpos":"23938","qlength":"29782","protein":"S","variant":"S810S","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"28580","refvar":"G","qvar":"T","qpos":"28526","qlength":"29782","protein":"N","variant":"D103Y","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/SHEF-C7F26/2020|EPI_ISL_462034|2020-05-13","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/SHEF-C8DD0/2020|EPI_ISL_448869|2020-04-17","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-C8DD0/2020|EPI_ISL_448869|2020-04-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-C8DD0/2020|EPI_ISL_448869|2020-04-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-C8DD0/2020|EPI_ISL_448869|2020-04-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C8DD0/2020|EPI_ISL_448869|2020-04-17","refpos":"27434","refvar":"C","qvar":"T","qpos":"27380","qlength":"29782","protein":"ORF7a","variant":"T14I","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/England/SHEF-C8DD0/2020|EPI_ISL_448869|2020-04-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/SHEF-CBA03/2020|EPI_ISL_453745|2020-04-22","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-CBA03/2020|EPI_ISL_453745|2020-04-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-CBA03/2020|EPI_ISL_453745|2020-04-22","refpos":"7736","refvar":"G","qvar":"A","qpos":"7682","qlength":"29782","protein":"NSP3","variant":"V1673I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-CBA03/2020|EPI_ISL_453745|2020-04-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-CBA03/2020|EPI_ISL_453745|2020-04-22","refpos":"15324","refvar":"C","qvar":"T","qpos":"15270","qlength":"29782","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-CBA03/2020|EPI_ISL_453745|2020-04-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-D0986/2020|EPI_ISL_448907|2020-04-16","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-D0986/2020|EPI_ISL_448907|2020-04-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-D0986/2020|EPI_ISL_448907|2020-04-16","refpos":"7736","refvar":"G","qvar":"A","qpos":"7682","qlength":"29782","protein":"NSP3","variant":"V1673I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-D0986/2020|EPI_ISL_448907|2020-04-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-D0986/2020|EPI_ISL_448907|2020-04-16","refpos":"14585","refvar":"C","qvar":"T","qpos":"14531","qlength":"29782","protein":"NSP12b","variant":"A373V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-D0986/2020|EPI_ISL_448907|2020-04-16","refpos":"15324","refvar":"C","qvar":"T","qpos":"15270","qlength":"29782","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-D0986/2020|EPI_ISL_448907|2020-04-16","refpos":"17795","refvar":"C","qvar":"T","qpos":"17741","qlength":"29782","protein":"NSP13","variant":"A520V","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/England/SHEF-D0986/2020|EPI_ISL_448907|2020-04-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-D1C22/2020|EPI_ISL_457683|2020-04-14","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/England/SHEF-D1C22/2020|EPI_ISL_457683|2020-04-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-D1C22/2020|EPI_ISL_457683|2020-04-14","refpos":"5206","refvar":"G","qvar":"T","qpos":"5152","qlength":"29782","protein":"NSP3","variant":"M829I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/SHEF-D1C22/2020|EPI_ISL_457683|2020-04-14","refpos":"10162","refvar":"T","qvar":"C","qpos":"10108","qlength":"29782","protein":"NSP5","variant":"V36V","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/England/SHEF-D1C22/2020|EPI_ISL_457683|2020-04-14","refpos":"12970","refvar":"C","qvar":"T","qpos":"12916","qlength":"29782","protein":"NSP9","variant":"N95N","varclass":"SNP_silent","annotation":"ssRNA-binding protein"}
{"sample":"hCoV-19/England/SHEF-D1C22/2020|EPI_ISL_457683|2020-04-14","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/SHEF-D1C22/2020|EPI_ISL_457683|2020-04-14","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-D1C22/2020|EPI_ISL_457683|2020-04-14","refpos":"25603","refvar":"C","qvar":"T","qpos":"25549","qlength":"29782","protein":"ORF3a","variant":"Q70Q","varclass":"SNP_silent","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/SHEF-D1C22/2020|EPI_ISL_457683|2020-04-14","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Finland/13M58/2020|EPI_ISL_418392|2020-03-13","refpos":"241","refvar":"C","qvar":"T","qpos":"243","qlength":"29814","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Finland/13M58/2020|EPI_ISL_418392|2020-03-13","refpos":"3037","refvar":"C","qvar":"T","qpos":"3039","qlength":"29814","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Finland/13M58/2020|EPI_ISL_418392|2020-03-13","refpos":"14408","refvar":"C","qvar":"T","qpos":"14410","qlength":"29814","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Finland/13M58/2020|EPI_ISL_418392|2020-03-13","refpos":"18877","refvar":"C","qvar":"T","qpos":"18879","qlength":"29814","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Finland/13M58/2020|EPI_ISL_418392|2020-03-13","refpos":"23403","refvar":"A","qvar":"G","qpos":"23405","qlength":"29814","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Finland/13M58/2020|EPI_ISL_418392|2020-03-13","refpos":"24197","refvar":"G","qvar":"T","qpos":"24199","qlength":"29814","protein":"S","variant":"A879S","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Finland/13M58/2020|EPI_ISL_418392|2020-03-13","refpos":"25563","refvar":"G","qvar":"T","qpos":"25565","qlength":"29814","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Finland/13M58/2020|EPI_ISL_418392|2020-03-13","refpos":"26735","refvar":"C","qvar":"T","qpos":"26737","qlength":"29814","protein":"M","variant":"Y71Y","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/France/10059IS/2020|EPI_ISL_447690|2020-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/France/10059IS/2020|EPI_ISL_447690|2020-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/France/10059IS/2020|EPI_ISL_447690|2020-03","refpos":"12076","refvar":"C","qvar":"T","qpos":"12076","qlength":"29903","protein":"NSP7","variant":"N78N","varclass":"SNP_silent","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/France/10059IS/2020|EPI_ISL_447690|2020-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/France/10059IS/2020|EPI_ISL_447690|2020-03","refpos":"15324","refvar":"C","qvar":"T","qpos":"15324","qlength":"29903","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/France/10059IS/2020|EPI_ISL_447690|2020-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/France/B2330/2020|EPI_ISL_416502|2020-02-26","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29837","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/France/B2330/2020|EPI_ISL_416502|2020-02-26","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29837","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/France/B2330/2020|EPI_ISL_416502|2020-02-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29837","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/France/B2330/2020|EPI_ISL_416502|2020-02-26","refpos":"12866","refvar":"G","qvar":"A","qpos":"12866","qlength":"29837","protein":"NSP9","variant":"G61R","varclass":"SNP","annotation":"ssRNA-binding protein"}
{"sample":"hCoV-19/France/B2330/2020|EPI_ISL_416502|2020-02-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29837","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/France/B2330/2020|EPI_ISL_416502|2020-02-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29837","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/France/B2330/2020|EPI_ISL_416502|2020-02-26","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29837","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/France/HF4220/2020|EPI_ISL_428366|2020-03-30","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29870","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/France/HF4220/2020|EPI_ISL_428366|2020-03-30","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29870","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/France/HF4220/2020|EPI_ISL_428366|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29870","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/France/HF4220/2020|EPI_ISL_428366|2020-03-30","refpos":"6541","refvar":"C","qvar":"T","qpos":"6541","qlength":"29870","protein":"NSP3","variant":"H1274H","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/France/HF4220/2020|EPI_ISL_428366|2020-03-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29870","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/France/HF4220/2020|EPI_ISL_428366|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29870","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/France/HF4220/2020|EPI_ISL_428366|2020-03-30","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29870","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/France/IDF3518/2020|EPI_ISL_428352|2020-03-23","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29869","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/France/IDF3518/2020|EPI_ISL_428352|2020-03-23","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29869","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/France/IDF3518/2020|EPI_ISL_428352|2020-03-23","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29869","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/France/IDF3518/2020|EPI_ISL_428352|2020-03-23","refpos":"15324","refvar":"C","qvar":"T","qpos":"15324","qlength":"29869","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/France/IDF3518/2020|EPI_ISL_428352|2020-03-23","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29869","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/France/Lyon_06464","refpos":"241","refvar":"C","qvar":"T","qpos":"243","qlength":"29879","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/France/Lyon_06464","refpos":"1059","refvar":"C","qvar":"T","qpos":"1061","qlength":"29879","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/France/Lyon_06464","refpos":"3037","refvar":"C","qvar":"T","qpos":"3039","qlength":"29879","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/France/Lyon_06464","refpos":"14408","refvar":"C","qvar":"T","qpos":"14410","qlength":"29879","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/France/Lyon_06464","refpos":"23403","refvar":"A","qvar":"G","qpos":"23405","qlength":"29879","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/France/Lyon_06464","refpos":"25563","refvar":"G","qvar":"T","qpos":"25565","qlength":"29879","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Greece/220_35357/2020|EPI_ISL_437887|2020-03-18","refpos":"241","refvar":"C","qvar":"T","qpos":"216","qlength":"29818","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Greece/220_35357/2020|EPI_ISL_437887|2020-03-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"3012","qlength":"29818","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Greece/220_35357/2020|EPI_ISL_437887|2020-03-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14383","qlength":"29818","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Greece/220_35357/2020|EPI_ISL_437887|2020-03-18","refpos":"20268","refvar":"A","qvar":"G","qpos":"20243","qlength":"29818","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Greece/220_35357/2020|EPI_ISL_437887|2020-03-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23378","qlength":"29818","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Greece/34_36284/2020|EPI_ISL_447832|2020-03-24","refpos":"241","refvar":"C","qvar":"T","qpos":"216","qlength":"29818","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Greece/34_36284/2020|EPI_ISL_447832|2020-03-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"3012","qlength":"29818","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Greece/34_36284/2020|EPI_ISL_447832|2020-03-24","refpos":"14408","refvar":"C","qvar":"T","qpos":"14383","qlength":"29818","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Greece/34_36284/2020|EPI_ISL_447832|2020-03-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23378","qlength":"29818","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Greece/34_36284/2020|EPI_ISL_447832|2020-03-24","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28856","qlength":"29818","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Hungary/SRC-00126/2020|EPI_ISL_435405|2020-03-22","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Hungary/SRC-00126/2020|EPI_ISL_435405|2020-03-22","refpos":"313","refvar":"C","qvar":"T","qpos":"313","qlength":"29903","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/Hungary/SRC-00126/2020|EPI_ISL_435405|2020-03-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Hungary/SRC-00126/2020|EPI_ISL_435405|2020-03-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Hungary/SRC-00126/2020|EPI_ISL_435405|2020-03-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Hungary/SRC-00126/2020|EPI_ISL_435405|2020-03-22","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"658","refvar":"T","qvar":"C","qpos":"658","qlength":"29903","protein":"NSP1","variant":"A131A","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"24378","refvar":"C","qvar":"T","qpos":"24378","qlength":"29903","protein":"S","variant":"S939F","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"24862","refvar":"A","qvar":"G","qpos":"24862","qlength":"29903","protein":"S","variant":"T1100T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"27476","refvar":"C","qvar":"T","qpos":"27476","qlength":"29903","protein":"ORF7a","variant":"T28I","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"28629","refvar":"C","qvar":"T","qpos":"28629","qlength":"29903","protein":"N","variant":"A119V","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Iceland/199/2020|EPI_ISL_417706|2020-03-16","refpos":"29541","refvar":"C","qvar":"T","qpos":"29541","qlength":"29903","protein":"intergenic","variant":"29541","varclass":"extragenic"}
{"sample":"hCoV-19/Iceland/305/2020|EPI_ISL_417634|2020-03-18","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Iceland/305/2020|EPI_ISL_417634|2020-03-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Iceland/305/2020|EPI_ISL_417634|2020-03-18","refpos":"10323","refvar":"A","qvar":"G","qpos":"10323","qlength":"29903","protein":"NSP5","variant":"K90R","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Iceland/305/2020|EPI_ISL_417634|2020-03-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Iceland/305/2020|EPI_ISL_417634|2020-03-18","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Iceland/305/2020|EPI_ISL_417634|2020-03-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Iceland/366/2020|EPI_ISL_424390|2020-03-19","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Iceland/366/2020|EPI_ISL_424390|2020-03-19","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Iceland/366/2020|EPI_ISL_424390|2020-03-19","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Iceland/366/2020|EPI_ISL_424390|2020-03-19","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Iceland/366/2020|EPI_ISL_424390|2020-03-19","refpos":"27430","refvar":"G","qvar":"A","qpos":"27430","qlength":"29903","protein":"ORF7a","variant":"A13T","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/Iceland/366/2020|EPI_ISL_424390|2020-03-19","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Iceland/589/2020|EPI_ISL_424609|2020-03-29","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Iceland/589/2020|EPI_ISL_424609|2020-03-29","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Iceland/589/2020|EPI_ISL_424609|2020-03-29","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Iceland/589/2020|EPI_ISL_424609|2020-03-29","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Iceland/589/2020|EPI_ISL_424609|2020-03-29","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Iceland/589/2020|EPI_ISL_424609|2020-03-29","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Iceland/70/2020|EPI_ISL_417728|2020-03-08","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Iceland/70/2020|EPI_ISL_417728|2020-03-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Iceland/70/2020|EPI_ISL_417728|2020-03-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Iceland/70/2020|EPI_ISL_417728|2020-03-08","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Iceland/70/2020|EPI_ISL_417728|2020-03-08","refpos":"27046","refvar":"C","qvar":"T","qpos":"27046","qlength":"29903","protein":"M","variant":"T175M","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Iceland/70/2020|EPI_ISL_417728|2020-03-08","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Iceland/70/2020|EPI_ISL_417728|2020-03-08","refpos":"29104","refvar":"T","qvar":"C","qpos":"29104","qlength":"29903","protein":"N","variant":"R277R","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"241","refvar":"C","qvar":"T","qpos":"203","qlength":"29819","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"313","refvar":"C","qvar":"T","qpos":"275","qlength":"29819","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"3037","refvar":"C","qvar":"T","qpos":"2999","qlength":"29819","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"5700","refvar":"C","qvar":"A","qpos":"5662","qlength":"29819","protein":"NSP3","variant":"A994D","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"7594","refvar":"C","qvar":"T","qpos":"7556","qlength":"29819","protein":"NSP3","variant":"G1625G","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"9693","refvar":"C","qvar":"T","qpos":"9655","qlength":"29819","protein":"NSP4","variant":"A380V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"14408","refvar":"C","qvar":"T","qpos":"14370","qlength":"29819","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"16626","refvar":"C","qvar":"T","qpos":"16588","qlength":"29819","protein":"NSP13","variant":"L130L","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"17454","refvar":"T","qvar":"C","qpos":"17416","qlength":"29819","protein":"NSP13","variant":"P406P","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"23403","refvar":"A","qvar":"G","qpos":"23365","qlength":"29819","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"27331","refvar":"C","qvar":"T","qpos":"27293","qlength":"29819","protein":"ORF6","variant":"S43S","varclass":"SNP_silent","annotation":"ORF6 protein"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"27697","refvar":"C","qvar":"T","qpos":"27659","qlength":"29819","protein":"ORF7a","variant":"L102F","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/India/CCMB_M712/2020|EPI_ISL_495230|2020-06-11","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28843","qlength":"29819","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/CCMB_OM16/2020|EPI_ISL_495282|2020-05-17","refpos":"241","refvar":"C","qvar":"T","qpos":"211","qlength":"29835","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/CCMB_OM16/2020|EPI_ISL_495282|2020-05-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3007","qlength":"29835","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/CCMB_OM16/2020|EPI_ISL_495282|2020-05-17","refpos":"4354","refvar":"G","qvar":"A","qpos":"4324","qlength":"29835","protein":"NSP3","variant":"E545E","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/CCMB_OM16/2020|EPI_ISL_495282|2020-05-17","refpos":"6573","refvar":"C","qvar":"T","qpos":"6543","qlength":"29835","protein":"NSP3","variant":"S1285F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/CCMB_OM16/2020|EPI_ISL_495282|2020-05-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14378","qlength":"29835","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/CCMB_OM16/2020|EPI_ISL_495282|2020-05-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23373","qlength":"29835","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/CCMB_OM16/2020|EPI_ISL_495282|2020-05-17","refpos":"25528","refvar":"C","qvar":"T","qpos":"25498","qlength":"29835","protein":"ORF3a","variant":"L46F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/India/CCMB_OM16/2020|EPI_ISL_495282|2020-05-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28851","qlength":"29835","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/GBRC115/2020|EPI_ISL_451160|2020-05-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/GBRC115/2020|EPI_ISL_451160|2020-05-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC115/2020|EPI_ISL_451160|2020-05-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC115/2020|EPI_ISL_451160|2020-05-03","refpos":"18877","refvar":"C","qvar":"T","qpos":"18877","qlength":"29903","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/India/GBRC115/2020|EPI_ISL_451160|2020-05-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC115/2020|EPI_ISL_451160|2020-05-03","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/India/GBRC115/2020|EPI_ISL_451160|2020-05-03","refpos":"26735","refvar":"C","qvar":"T","qpos":"26735","qlength":"29903","protein":"M","variant":"Y71Y","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"2836","refvar":"C","qvar":"T","qpos":"2836","qlength":"29903","protein":"NSP3","variant":"C39C","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"10277","refvar":"C","qvar":"T","qpos":"10277","qlength":"29903","protein":"NSP5","variant":"L75F","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"12076","refvar":"C","qvar":"T","qpos":"12076","qlength":"29903","protein":"NSP7","variant":"N78N","varclass":"SNP_silent","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"17766","refvar":"C","qvar":"T","qpos":"17766","qlength":"29903","protein":"NSP13","variant":"V510V","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"18877","refvar":"C","qvar":"T","qpos":"18877","qlength":"29903","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"22444","refvar":"C","qvar":"T","qpos":"22444","qlength":"29903","protein":"S","variant":"D294D","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"26735","refvar":"C","qvar":"T","qpos":"26735","qlength":"29903","protein":"M","variant":"Y71Y","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24","refpos":"28854","refvar":"C","qvar":"T","qpos":"28854","qlength":"29903","protein":"N","variant":"S194L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/GBRC163b/2020|EPI_ISL_461498|2020-05-27","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/GBRC163b/2020|EPI_ISL_461498|2020-05-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC163b/2020|EPI_ISL_461498|2020-05-27","refpos":"4067","refvar":"G","qvar":"A","qpos":"4067","qlength":"29903","protein":"NSP3","variant":"A450T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC163b/2020|EPI_ISL_461498|2020-05-27","refpos":"5572","refvar":"G","qvar":"T","qpos":"5572","qlength":"29903","protein":"NSP3","variant":"M951I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC163b/2020|EPI_ISL_461498|2020-05-27","refpos":"8460","refvar":"C","qvar":"A","qpos":"8460","qlength":"29903","protein":"NSP3","variant":"A1914D","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC163b/2020|EPI_ISL_461498|2020-05-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC163b/2020|EPI_ISL_461498|2020-05-27","refpos":"14673","refvar":"A","qvar":"G","qpos":"14673","qlength":"29903","protein":"NSP12b","variant":"K402K","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC163b/2020|EPI_ISL_461498|2020-05-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC163b/2020|EPI_ISL_461498|2020-05-27","refpos":"27213","refvar":"C","qvar":"T","qpos":"27213","qlength":"29903","protein":"ORF6","variant":"L4L","varclass":"SNP_silent","annotation":"ORF6 protein"}
{"sample":"hCoV-19/India/GBRC174a/2020|EPI_ISL_467037|2020-06-05","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/GBRC174a/2020|EPI_ISL_467037|2020-06-05","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC174a/2020|EPI_ISL_467037|2020-06-05","refpos":"3634","refvar":"C","qvar":"T","qpos":"3634","qlength":"29903","protein":"NSP3","variant":"N305N","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC174a/2020|EPI_ISL_467037|2020-06-05","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC174a/2020|EPI_ISL_467037|2020-06-05","refpos":"15324","refvar":"C","qvar":"T","qpos":"15324","qlength":"29903","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC174a/2020|EPI_ISL_467037|2020-06-05","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC195b/2020|EPI_ISL_469040|2020-06-08","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/GBRC195b/2020|EPI_ISL_469040|2020-06-08","refpos":"2292","refvar":"A","qvar":"C","qpos":"2292","qlength":"29903","protein":"NSP2","variant":"Q496P","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/India/GBRC195b/2020|EPI_ISL_469040|2020-06-08","refpos":"2836","refvar":"C","qvar":"T","qpos":"2836","qlength":"29903","protein":"NSP3","variant":"C39C","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC195b/2020|EPI_ISL_469040|2020-06-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC195b/2020|EPI_ISL_469040|2020-06-08","refpos":"4084","refvar":"C","qvar":"T","qpos":"4084","qlength":"29903","protein":"NSP3","variant":"D455D","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC195b/2020|EPI_ISL_469040|2020-06-08","refpos":"9246","refvar":"C","qvar":"T","qpos":"9246","qlength":"29903","protein":"NSP4","variant":"A231V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/India/GBRC195b/2020|EPI_ISL_469040|2020-06-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC195b/2020|EPI_ISL_469040|2020-06-08","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC195b/2020|EPI_ISL_469040|2020-06-08","refpos":"29750","refvar":"C","qvar":"T","qpos":"29750","qlength":"29903","protein":"3'UTR","variant":"29750","varclass":"extragenic"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"241","refvar":"C","qvar":"T","qpos":"212","qlength":"29825","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"3008","qlength":"29825","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"5176","refvar":"A","qvar":"G","qpos":"5147","qlength":"29825","protein":"NSP3","variant":"T819T","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14379","qlength":"29825","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"18877","refvar":"C","qvar":"T","qpos":"18848","qlength":"29825","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"21742","refvar":"C","qvar":"T","qpos":"21713","qlength":"29825","protein":"S","variant":"S60S","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"21851","refvar":"A","qvar":"C","qpos":"21822","qlength":"29825","protein":"S","variant":"K97Q","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"22273","refvar":"G","qvar":"A","qpos":"22244","qlength":"29825","protein":"S","variant":"R237R","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23374","qlength":"29825","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"25563","refvar":"G","qvar":"T","qpos":"25534","qlength":"29825","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"26735","refvar":"C","qvar":"T","qpos":"26706","qlength":"29825","protein":"M","variant":"Y71Y","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/India/GBRC311a/2020|EPI_ISL_495065|2020-06-20","refpos":"29750","refvar":"C","qvar":"T","qpos":"29721","qlength":"29825","protein":"3'UTR","variant":"29750","varclass":"extragenic"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"2836","refvar":"C","qvar":"T","qpos":"2836","qlength":"29903","protein":"NSP3","variant":"C39C","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"16078","refvar":"G","qvar":"A","qpos":"16078","qlength":"29903","protein":"NSP12b","variant":"V871I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"18877","refvar":"C","qvar":"T","qpos":"18877","qlength":"29903","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"22444","refvar":"C","qvar":"T","qpos":"22444","qlength":"29903","protein":"S","variant":"D294D","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"26735","refvar":"C","qvar":"T","qpos":"26735","qlength":"29903","protein":"M","variant":"Y71Y","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22","refpos":"28854","refvar":"C","qvar":"T","qpos":"28854","qlength":"29903","protein":"N","variant":"S194L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/ILSCV30221/2020|EPI_ISL_481144|2020-05-23","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29864","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/ILSCV30221/2020|EPI_ISL_481144|2020-05-23","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29864","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/ILSCV30221/2020|EPI_ISL_481144|2020-05-23","refpos":"3543","refvar":"C","qvar":"T","qpos":"3543","qlength":"29864","protein":"NSP3","variant":"T275I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/ILSCV30221/2020|EPI_ISL_481144|2020-05-23","refpos":"3634","refvar":"C","qvar":"T","qpos":"3634","qlength":"29864","protein":"NSP3","variant":"N305N","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/ILSCV30221/2020|EPI_ISL_481144|2020-05-23","refpos":"7960","refvar":"G","qvar":"T","qpos":"7960","qlength":"29864","protein":"NSP3","variant":"M1747I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/ILSCV30221/2020|EPI_ISL_481144|2020-05-23","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29864","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/ILSCV30221/2020|EPI_ISL_481144|2020-05-23","refpos":"15324","refvar":"C","qvar":"T","qpos":"15324","qlength":"29864","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/ILSCV30221/2020|EPI_ISL_481144|2020-05-23","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29864","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29876","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29876","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"4354","refvar":"G","qvar":"A","qpos":"4354","qlength":"29876","protein":"NSP3","variant":"E545E","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"6027","refvar":"C","qvar":"T","qpos":"6027","qlength":"29876","protein":"NSP3","variant":"P1103L","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"6573","refvar":"C","qvar":"T","qpos":"6573","qlength":"29876","protein":"NSP3","variant":"S1285F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"8090","refvar":"C","qvar":"T","qpos":"8090","qlength":"29876","protein":"NSP3","variant":"L1791F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29876","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29876","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"25528","refvar":"C","qvar":"T","qpos":"25528","qlength":"29876","protein":"ORF3a","variant":"L46F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29876","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/NGC-CDFD-34/2020|EPI_ISL_466872|2020-05-30","refpos":"29044","refvar":"G","qvar":"A","qpos":"29044","qlength":"29876","protein":"N","variant":"K257K","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/NIV-20608/2020|EPI_ISL_479514|2020-05-04","refpos":"241","refvar":"C","qvar":"T","qpos":"215","qlength":"29797","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/NIV-20608/2020|EPI_ISL_479514|2020-05-04","refpos":"313","refvar":"C","qvar":"T","qpos":"287","qlength":"29797","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/India/NIV-20608/2020|EPI_ISL_479514|2020-05-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"3011","qlength":"29797","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NIV-20608/2020|EPI_ISL_479514|2020-05-04","refpos":"5700","refvar":"C","qvar":"A","qpos":"5674","qlength":"29797","protein":"NSP3","variant":"A994D","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NIV-20608/2020|EPI_ISL_479514|2020-05-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14382","qlength":"29797","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/NIV-20608/2020|EPI_ISL_479514|2020-05-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23377","qlength":"29797","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/NIV-20608/2020|EPI_ISL_479514|2020-05-04","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28855","qlength":"29797","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"241","refvar":"C","qvar":"T","qpos":"215","qlength":"29797","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"313","refvar":"C","qvar":"T","qpos":"287","qlength":"29797","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"2568","refvar":"A","qvar":"G","qpos":"2542","qlength":"29797","protein":"NSP2","variant":"Q588R","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"3037","refvar":"C","qvar":"T","qpos":"3011","qlength":"29797","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"5700","refvar":"C","qvar":"A","qpos":"5674","qlength":"29797","protein":"NSP3","variant":"A994D","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"7600","refvar":"C","qvar":"T","qpos":"7574","qlength":"29797","protein":"NSP3","variant":"C1627C","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"8326","refvar":"C","qvar":"T","qpos":"8300","qlength":"29797","protein":"NSP3","variant":"D1869D","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"10846","refvar":"G","qvar":"T","qpos":"10820","qlength":"29797","protein":"NSP5","variant":"M264I","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"14408","refvar":"C","qvar":"T","qpos":"14382","qlength":"29797","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"20991","refvar":"G","qvar":"T","qpos":"20965","qlength":"29797","protein":"NSP16","variant":"L111F","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"21974","refvar":"G","qvar":"T","qpos":"21948","qlength":"29797","protein":"S","variant":"D138Y","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"23403","refvar":"A","qvar":"G","qpos":"23377","qlength":"29797","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"26217","refvar":"G","qvar":"T","qpos":"26191","qlength":"29797","protein":"ORF3a","variant":"L275F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/India/NIV-64463/2020|EPI_ISL_479554|2020-06-15","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28855","qlength":"29797","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/S6/2020|EPI_ISL_430466|2020-03-26","refpos":"241","refvar":"C","qvar":"T","qpos":"228","qlength":"29857","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/India/S6/2020|EPI_ISL_430466|2020-03-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"3024","qlength":"29857","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/S6/2020|EPI_ISL_430466|2020-03-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14395","qlength":"29857","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/S6/2020|EPI_ISL_430466|2020-03-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23390","qlength":"29857","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/S6/2020|EPI_ISL_430466|2020-03-26","refpos":"23730","refvar":"C","qvar":"T","qpos":"23717","qlength":"29857","protein":"S","variant":"T723I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/India/S6/2020|EPI_ISL_430466|2020-03-26","refpos":"25429","refvar":"G","qvar":"T","qpos":"25416","qlength":"29857","protein":"ORF3a","variant":"V13L","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Ireland/20W268/2020|EPI_ISL_437686|2020-04","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Ireland/20W268/2020|EPI_ISL_437686|2020-04","refpos":"1648","refvar":"C","qvar":"T","qpos":"1594","qlength":"29782","protein":"NSP2","variant":"I281I","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Ireland/20W268/2020|EPI_ISL_437686|2020-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Ireland/20W268/2020|EPI_ISL_437686|2020-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Ireland/20W268/2020|EPI_ISL_437686|2020-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Ireland/20W268/2020|EPI_ISL_437686|2020-04","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Israel/1639953/2020|EPI_ISL_447418|2020-03-26","refpos":"241","refvar":"C","qvar":"T","qpos":"242","qlength":"29892","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Israel/1639953/2020|EPI_ISL_447418|2020-03-26","refpos":"1059","refvar":"C","qvar":"T","qpos":"1060","qlength":"29892","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Israel/1639953/2020|EPI_ISL_447418|2020-03-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"3038","qlength":"29892","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Israel/1639953/2020|EPI_ISL_447418|2020-03-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14409","qlength":"29892","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Israel/1639953/2020|EPI_ISL_447418|2020-03-26","refpos":"20755","refvar":"A","qvar":"C","qpos":"20756","qlength":"29892","protein":"NSP16","variant":"S33R","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/Israel/1639953/2020|EPI_ISL_447418|2020-03-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23404","qlength":"29892","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Israel/1639953/2020|EPI_ISL_447418|2020-03-26","refpos":"25563","refvar":"G","qvar":"T","qpos":"25564","qlength":"29892","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Israel/1639953/2020|EPI_ISL_447418|2020-03-26","refpos":"29445","refvar":"C","qvar":"T","qpos":"29446","qlength":"29892","protein":"N","variant":"T391I","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"11916","refvar":"C","qvar":"T","qpos":"11916","qlength":"29903","protein":"NSP7","variant":"S25L","varclass":"SNP","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"18998","refvar":"C","qvar":"T","qpos":"18998","qlength":"29903","protein":"NSP14","variant":"A320V","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"26217","refvar":"G","qvar":"T","qpos":"26217","qlength":"29903","protein":"ORF3a","variant":"L275F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"28703","refvar":"G","qvar":"T","qpos":"28703","qlength":"29903","protein":"N","variant":"D144Y","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"28744","refvar":"C","qvar":"T","qpos":"28744","qlength":"29903","protein":"N","variant":"I157I","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Israel/CVL-n-11468/2020|EPI_ISL_474985|2020-04-25","refpos":"29540","refvar":"G","qvar":"A","qpos":"29540","qlength":"29903","protein":"intergenic","variant":"29540","varclass":"extragenic"}
{"sample":"hCoV-19/Japan/PG-0355/2020|EPI_ISL_480027|2020-03-31","refpos":"241","refvar":"C","qvar":"T","qpos":"211","qlength":"29829","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Japan/PG-0355/2020|EPI_ISL_480027|2020-03-31","refpos":"313","refvar":"C","qvar":"T","qpos":"283","qlength":"29829","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/Japan/PG-0355/2020|EPI_ISL_480027|2020-03-31","refpos":"3037","refvar":"C","qvar":"T","qpos":"3007","qlength":"29829","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Japan/PG-0355/2020|EPI_ISL_480027|2020-03-31","refpos":"14408","refvar":"C","qvar":"T","qpos":"14378","qlength":"29829","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Japan/PG-0355/2020|EPI_ISL_480027|2020-03-31","refpos":"20238","refvar":"G","qvar":"T","qpos":"20208","qlength":"29829","protein":"NSP15","variant":"R206S","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/Japan/PG-0355/2020|EPI_ISL_480027|2020-03-31","refpos":"23403","refvar":"A","qvar":"G","qpos":"23373","qlength":"29829","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Japan/PG-0355/2020|EPI_ISL_480027|2020-03-31","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28851","qlength":"29829","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"520","refvar":"G","qvar":"T","qpos":"520","qlength":"29903","protein":"NSP1","variant":"M85I","varclass":"SNP","annotation":"Leader protein"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"3206","refvar":"G","qvar":"T","qpos":"3206","qlength":"29903","protein":"NSP3","variant":"D163Y","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"4207","refvar":"G","qvar":"T","qpos":"4207","qlength":"29903","protein":"NSP3","variant":"A496A","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"13575","refvar":"TG","qvar":"CT","qpos":"13575","qlength":"29903","protein":"NSP12b","variant":"A37S","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"22458","refvar":"C","qvar":"T","qpos":"22458","qlength":"29903","protein":"S","variant":"T299I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"22530","refvar":"C","qvar":"T","qpos":"22530","qlength":"29903","protein":"S","variant":"T323I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"25831","refvar":"C","qvar":"T","qpos":"25831","qlength":"29903","protein":"ORF3a","variant":"L147F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Latvia/025/2020|EPI_ISL_486390|2020-05-09","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Latvia/026/2020|EPI_ISL_486391|2020-05-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Latvia/026/2020|EPI_ISL_486391|2020-05-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Latvia/026/2020|EPI_ISL_486391|2020-05-03","refpos":"12988","refvar":"G","qvar":"T","qpos":"12988","qlength":"29903","protein":"NSP9","variant":"M101I","varclass":"SNP","annotation":"ssRNA-binding protein"}
{"sample":"hCoV-19/Latvia/026/2020|EPI_ISL_486391|2020-05-03","refpos":"13575","refvar":"TG","qvar":"CT","qpos":"13575","qlength":"29903","protein":"NSP12b","variant":"A37S","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Latvia/026/2020|EPI_ISL_486391|2020-05-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Latvia/026/2020|EPI_ISL_486391|2020-05-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Latvia/026/2020|EPI_ISL_486391|2020-05-03","refpos":"25831","refvar":"C","qvar":"T","qpos":"25831","qlength":"29903","protein":"ORF3a","variant":"L147F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Latvia/026/2020|EPI_ISL_486391|2020-05-03","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29775","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"1594","refvar":"C","qvar":"T","qpos":"1540","qlength":"29775","protein":"NSP2","variant":"S263S","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29775","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"7042","refvar":"G","qvar":"T","qpos":"6988","qlength":"29775","protein":"NSP3","variant":"M1441I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"11109","refvar":"C","qvar":"T","qpos":"11055","qlength":"29775","protein":"NSP6","variant":"A46V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"13458","refvar":"C","qvar":"T","qpos":"13404","qlength":"29775","protein":"NSP12a","variant":"S6L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, pre-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29775","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29775","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29775","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Netherlands/Gelderland_125/2020|EPI_ISL_460886|2020-05-22","refpos":"27654","refvar":"C","qvar":"T","qpos":"27600","qlength":"29775","protein":"ORF7a","variant":"F87F","varclass":"SNP_silent","annotation":"ORF7a protein"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29775","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"1594","refvar":"C","qvar":"T","qpos":"1540","qlength":"29775","protein":"NSP2","variant":"S263S","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29775","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"11109","refvar":"C","qvar":"T","qpos":"11055","qlength":"29775","protein":"NSP6","variant":"A46V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"13458","refvar":"C","qvar":"T","qpos":"13404","qlength":"29775","protein":"NSP12a","variant":"S6L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, pre-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29775","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"22206","refvar":"A","qvar":"G","qpos":"22152","qlength":"29775","protein":"S","variant":"D215G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29775","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29775","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Netherlands/Gelderland_126/2020|EPI_ISL_460887|2020-05-22","refpos":"27654","refvar":"C","qvar":"T","qpos":"27600","qlength":"29775","protein":"ORF7a","variant":"F87F","varclass":"SNP_silent","annotation":"ORF7a protein"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29775","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29775","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"3044","refvar":"C","qvar":"T","qpos":"2990","qlength":"29775","protein":"NSP3","variant":"P109S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"11638","refvar":"T","qvar":"C","qpos":"11584","qlength":"29775","protein":"NSP6","variant":"T222T","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29775","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"21786","refvar":"G","qvar":"T","qpos":"21732","qlength":"29775","protein":"S","variant":"G75V","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29775","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"27549","refvar":"C","qvar":"T","qpos":"27495","qlength":"29775","protein":"ORF7a","variant":"N52N","varclass":"SNP_silent","annotation":"ORF7a protein"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29775","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Netherlands/Limburg_47/2020|EPI_ISL_461035|2020-04-02","refpos":"29708","refvar":"C","qvar":"T","qpos":"29654","qlength":"29775","protein":"3'UTR","variant":"29708","varclass":"extragenic"}
{"sample":"hCoV-19/Netherlands/NA_429/2020|EPI_ISL_455231|2020-04-06","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29775","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Netherlands/NA_429/2020|EPI_ISL_455231|2020-04-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29775","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Netherlands/NA_429/2020|EPI_ISL_455231|2020-04-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29775","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/NA_429/2020|EPI_ISL_455231|2020-04-06","refpos":"19170","refvar":"C","qvar":"T","qpos":"19116","qlength":"29775","protein":"NSP14","variant":"F377F","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Netherlands/NA_429/2020|EPI_ISL_455231|2020-04-06","refpos":"19509","refvar":"G","qvar":"A","qpos":"19455","qlength":"29775","protein":"NSP14","variant":"E490E","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Netherlands/NA_429/2020|EPI_ISL_455231|2020-04-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29775","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Netherlands/NA_429/2020|EPI_ISL_455231|2020-04-06","refpos":"26313","refvar":"C","qvar":"T","qpos":"26259","qlength":"29775","protein":"E","variant":"F23F","varclass":"SNP_silent","annotation":"Envelope"}
{"sample":"hCoV-19/Netherlands/NA_429/2020|EPI_ISL_455231|2020-04-06","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29775","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Netherlands/NA_529/2020|EPI_ISL_460702|2020-04-08","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29775","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Netherlands/NA_529/2020|EPI_ISL_460702|2020-04-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29775","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Netherlands/NA_529/2020|EPI_ISL_460702|2020-04-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29775","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/NA_529/2020|EPI_ISL_460702|2020-04-08","refpos":"20275","refvar":"G","qvar":"A","qpos":"20221","qlength":"29775","protein":"NSP15","variant":"D219N","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/Netherlands/NA_529/2020|EPI_ISL_460702|2020-04-08","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29775","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_162/2020|EPI_ISL_461334|2020-05-14","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29775","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_162/2020|EPI_ISL_461334|2020-05-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29775","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_162/2020|EPI_ISL_461334|2020-05-14","refpos":"10561","refvar":"T","qvar":"C","qpos":"10507","qlength":"29775","protein":"NSP5","variant":"T169T","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_162/2020|EPI_ISL_461334|2020-05-14","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29775","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_162/2020|EPI_ISL_461334|2020-05-14","refpos":"15324","refvar":"C","qvar":"T","qpos":"15270","qlength":"29775","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_162/2020|EPI_ISL_461334|2020-05-14","refpos":"20531","refvar":"A","qvar":"C","qpos":"20477","qlength":"29775","protein":"NSP15","variant":"E304A","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/Netherlands/ZuidHolland_162/2020|EPI_ISL_461334|2020-05-14","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29775","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Oman/B-3123/2020|EPI_ISL_491131|2020-04-25","refpos":"241","refvar":"C","qvar":"T","qpos":"217","qlength":"29858","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Oman/B-3123/2020|EPI_ISL_491131|2020-04-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"3013","qlength":"29858","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Oman/B-3123/2020|EPI_ISL_491131|2020-04-25","refpos":"10265","refvar":"G","qvar":"A","qpos":"10241","qlength":"29858","protein":"NSP5","variant":"G71S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Oman/B-3123/2020|EPI_ISL_491131|2020-04-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14384","qlength":"29858","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Oman/B-3123/2020|EPI_ISL_491131|2020-04-25","refpos":"16293","refvar":"C","qvar":"T","qpos":"16269","qlength":"29858","protein":"NSP13","variant":"C19C","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/Oman/B-3123/2020|EPI_ISL_491131|2020-04-25","refpos":"17302","refvar":"G","qvar":"T","qpos":"17278","qlength":"29858","protein":"NSP13","variant":"V356F","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Oman/B-3123/2020|EPI_ISL_491131|2020-04-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23379","qlength":"29858","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Oman/B-3123/2020|EPI_ISL_491131|2020-04-25","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28857","qlength":"29858","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Portugal/IGC3009/2020|EPI_ISL_491184|2020-05-20","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Portugal/IGC3009/2020|EPI_ISL_491184|2020-05-20","refpos":"2399","refvar":"C","qvar":"T","qpos":"2345","qlength":"29782","protein":"NSP2","variant":"H532Y","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Portugal/IGC3009/2020|EPI_ISL_491184|2020-05-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/IGC3009/2020|EPI_ISL_491184|2020-05-20","refpos":"6391","refvar":"A","qvar":"G","qpos":"6337","qlength":"29782","protein":"NSP3","variant":"E1224E","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/IGC3009/2020|EPI_ISL_491184|2020-05-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Portugal/IGC3009/2020|EPI_ISL_491184|2020-05-20","refpos":"19212","refvar":"A","qvar":"G","qpos":"19158","qlength":"29782","protein":"NSP14","variant":"R391R","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Portugal/IGC3009/2020|EPI_ISL_491184|2020-05-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/IGC3009/2020|EPI_ISL_491184|2020-05-20","refpos":"28237","refvar":"G","qvar":"T","qpos":"28183","qlength":"29782","protein":"ORF8","variant":"R115L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/Portugal/IGC3009/2020|EPI_ISL_491184|2020-05-20","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Portugal/PT0171/2020|EPI_ISL_453887|2020-03-28","refpos":"241","refvar":"C","qvar":"T","qpos":"91","qlength":"29653","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Portugal/PT0171/2020|EPI_ISL_453887|2020-03-28","refpos":"3037","refvar":"C","qvar":"T","qpos":"2887","qlength":"29653","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/PT0171/2020|EPI_ISL_453887|2020-03-28","refpos":"14408","refvar":"C","qvar":"T","qpos":"14258","qlength":"29653","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Portugal/PT0171/2020|EPI_ISL_453887|2020-03-28","refpos":"23403","refvar":"A","qvar":"G","qpos":"23253","qlength":"29653","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0171/2020|EPI_ISL_453887|2020-03-28","refpos":"26792","refvar":"G","qvar":"T","qpos":"26642","qlength":"29653","protein":"M","variant":"L90F","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Portugal/PT0171/2020|EPI_ISL_453887|2020-03-28","refpos":"26892","refvar":"C","qvar":"T","qpos":"26742","qlength":"29653","protein":"M","variant":"L124F","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Portugal/PT0171/2020|EPI_ISL_453887|2020-03-28","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28731","qlength":"29653","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"241","refvar":"C","qvar":"T","qpos":"91","qlength":"29653","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"1346","refvar":"C","qvar":"T","qpos":"1196","qlength":"29653","protein":"NSP2","variant":"P181S","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"2887","qlength":"29653","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"3140","refvar":"C","qvar":"T","qpos":"2990","qlength":"29653","protein":"NSP3","variant":"P141S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14258","qlength":"29653","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"22450","refvar":"C","qvar":"T","qpos":"22300","qlength":"29653","protein":"S","variant":"L296L","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23253","qlength":"29653","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"24077","refvar":"G","qvar":"T","qpos":"23927","qlength":"29653","protein":"S","variant":"D839Y","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"27206","refvar":"T","qvar":"C","qpos":"27056","qlength":"29653","protein":"ORF6","variant":"F2S","varclass":"SNP","annotation":"ORF6 protein"}
{"sample":"hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30","refpos":"29555","refvar":"C","qvar":"T","qpos":"29405","qlength":"29653","protein":"intergenic","variant":"29555","varclass":"extragenic"}
{"sample":"hCoV-19/Portugal/PT0379/2020|EPI_ISL_454095|2020-03-20","refpos":"241","refvar":"C","qvar":"T","qpos":"201","qlength":"29763","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Portugal/PT0379/2020|EPI_ISL_454095|2020-03-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"2997","qlength":"29763","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/PT0379/2020|EPI_ISL_454095|2020-03-20","refpos":"3140","refvar":"C","qvar":"T","qpos":"3100","qlength":"29763","protein":"NSP3","variant":"P141S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/PT0379/2020|EPI_ISL_454095|2020-03-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14368","qlength":"29763","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Portugal/PT0379/2020|EPI_ISL_454095|2020-03-20","refpos":"18816","refvar":"G","qvar":"T","qpos":"18776","qlength":"29763","protein":"NSP14","variant":"L259L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Portugal/PT0379/2020|EPI_ISL_454095|2020-03-20","refpos":"20148","refvar":"C","qvar":"T","qpos":"20108","qlength":"29763","protein":"NSP15","variant":"F176F","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Portugal/PT0379/2020|EPI_ISL_454095|2020-03-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23363","qlength":"29763","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0379/2020|EPI_ISL_454095|2020-03-20","refpos":"24077","refvar":"G","qvar":"T","qpos":"24037","qlength":"29763","protein":"S","variant":"D839Y","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0379/2020|EPI_ISL_454095|2020-03-20","refpos":"29555","refvar":"C","qvar":"T","qpos":"29515","qlength":"29763","protein":"intergenic","variant":"29555","varclass":"extragenic"}
{"sample":"hCoV-19/Portugal/PT0383/2020|EPI_ISL_454099|2020-03-19","refpos":"241","refvar":"C","qvar":"T","qpos":"194","qlength":"29756","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Portugal/PT0383/2020|EPI_ISL_454099|2020-03-19","refpos":"3037","refvar":"C","qvar":"T","qpos":"2990","qlength":"29756","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/PT0383/2020|EPI_ISL_454099|2020-03-19","refpos":"14408","refvar":"C","qvar":"T","qpos":"14361","qlength":"29756","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Portugal/PT0383/2020|EPI_ISL_454099|2020-03-19","refpos":"17639","refvar":"C","qvar":"T","qpos":"17592","qlength":"29756","protein":"NSP13","variant":"S468L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Portugal/PT0383/2020|EPI_ISL_454099|2020-03-19","refpos":"20268","refvar":"A","qvar":"G","qpos":"20221","qlength":"29756","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Portugal/PT0383/2020|EPI_ISL_454099|2020-03-19","refpos":"23403","refvar":"A","qvar":"G","qpos":"23356","qlength":"29756","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0383/2020|EPI_ISL_454099|2020-03-19","refpos":"28638","refvar":"C","qvar":"T","qpos":"28591","qlength":"29756","protein":"N","variant":"P122L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"241","refvar":"C","qvar":"T","qpos":"201","qlength":"29763","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"1059","refvar":"C","qvar":"T","qpos":"1019","qlength":"29763","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"1480","refvar":"C","qvar":"T","qpos":"1440","qlength":"29763","protein":"NSP2","variant":"A225A","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"2997","qlength":"29763","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"12473","refvar":"C","qvar":"T","qpos":"12433","qlength":"29763","protein":"NSP8","variant":"K127K","varclass":"SNP_silent","annotation":"Non-Structural protein 8"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14368","qlength":"29763","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23363","qlength":"29763","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"25273","refvar":"G","qvar":"T","qpos":"25233","qlength":"29763","protein":"S","variant":"M1237I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"28657","refvar":"C","qvar":"T","qpos":"28617","qlength":"29763","protein":"N","variant":"D128D","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28841","qlength":"29763","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Portugal/PT0559/2020|EPI_ISL_454282|2020-04-22","refpos":"29422","refvar":"G","qvar":"T","qpos":"29382","qlength":"29763","protein":"N","variant":"P383P","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Portugal/PT0580/2020|EPI_ISL_454303|2020-03-25","refpos":"241","refvar":"C","qvar":"T","qpos":"201","qlength":"29763","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Portugal/PT0580/2020|EPI_ISL_454303|2020-03-25","refpos":"335","refvar":"C","qvar":"T","qpos":"295","qlength":"29763","protein":"NSP1","variant":"R24C","varclass":"SNP","annotation":"Leader protein"}
{"sample":"hCoV-19/Portugal/PT0580/2020|EPI_ISL_454303|2020-03-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"2997","qlength":"29763","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Portugal/PT0580/2020|EPI_ISL_454303|2020-03-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14368","qlength":"29763","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Portugal/PT0580/2020|EPI_ISL_454303|2020-03-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23363","qlength":"29763","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Portugal/PT0580/2020|EPI_ISL_454303|2020-03-25","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28841","qlength":"29763","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Russia/SCPM-O-01/2020|EPI_ISL_451963|2020-03-20","refpos":"241","refvar":"C","qvar":"T","qpos":"175","qlength":"29544","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Russia/SCPM-O-01/2020|EPI_ISL_451963|2020-03-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"2971","qlength":"29544","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Russia/SCPM-O-01/2020|EPI_ISL_451963|2020-03-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14342","qlength":"29544","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Russia/SCPM-O-01/2020|EPI_ISL_451963|2020-03-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23337","qlength":"29544","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Russia/SCPM-O-01/2020|EPI_ISL_451963|2020-03-20","refpos":"27046","refvar":"C","qvar":"T","qpos":"26980","qlength":"29544","protein":"M","variant":"T175M","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Russia/SCPM-O-01/2020|EPI_ISL_451963|2020-03-20","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28815","qlength":"29544","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Russia/StPetersburg-RII4969S/2020|EPI_ISL_430076|2020-04-10","refpos":"241","refvar":"C","qvar":"T","qpos":"239","qlength":"29870","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Russia/StPetersburg-RII4969S/2020|EPI_ISL_430076|2020-04-10","refpos":"3037","refvar":"C","qvar":"T","qpos":"3035","qlength":"29870","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Russia/StPetersburg-RII4969S/2020|EPI_ISL_430076|2020-04-10","refpos":"14408","refvar":"C","qvar":"T","qpos":"14406","qlength":"29870","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Russia/StPetersburg-RII4969S/2020|EPI_ISL_430076|2020-04-10","refpos":"23403","refvar":"A","qvar":"G","qpos":"23401","qlength":"29870","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Russia/StPetersburg-RII4969S/2020|EPI_ISL_430076|2020-04-10","refpos":"26750","refvar":"C","qvar":"T","qpos":"26748","qlength":"29870","protein":"M","variant":"I76I","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/Russia/StPetersburg-RII4969S/2020|EPI_ISL_430076|2020-04-10","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28879","qlength":"29870","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"241","refvar":"C","qvar":"T","qpos":"211","qlength":"29839","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"583","refvar":"C","qvar":"T","qpos":"553","qlength":"29839","protein":"NSP1","variant":"V106V","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"1616","refvar":"C","qvar":"T","qpos":"1586","qlength":"29839","protein":"NSP2","variant":"L271F","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3007","qlength":"29839","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"13356","refvar":"C","qvar":"T","qpos":"13326","qlength":"29839","protein":"NSP10","variant":"T111I","varclass":"SNP","annotation":"Growth-factor-like protein"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14378","qlength":"29839","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"20268","refvar":"A","qvar":"G","qpos":"20238","qlength":"29839","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23373","qlength":"29839","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"27145","refvar":"C","qvar":"T","qpos":"27115","qlength":"29839","protein":"M","variant":"T208I","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"28562","refvar":"G","qvar":"A","qpos":"28532","qlength":"29839","protein":"N","variant":"G97S","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Russia/StPetersburg-RII8372S/2020|EPI_ISL_450277|2020-04-22","refpos":"28692","refvar":"A","qvar":"C","qpos":"28662","qlength":"29839","protein":"N","variant":"N140T","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"26542","refvar":"C","qvar":"T","qpos":"26488","qlength":"29782","protein":"M","variant":"T7I","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"27046","refvar":"C","qvar":"T","qpos":"26992","qlength":"29782","protein":"M","variant":"T175M","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"28300","refvar":"G","qvar":"T","qpos":"28246","qlength":"29782","protein":"N","variant":"Q9H","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"28914","refvar":"G","qvar":"T","qpos":"28860","qlength":"29782","protein":"N","variant":"G214V","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/CVR2571/2020|EPI_ISL_477975|2020-04-15","refpos":"29642","refvar":"C","qvar":"T","qpos":"29588","qlength":"29782","protein":"ORF10","variant":"Q29*","varclass":"SNP_stop","annotation":"ORF10 protein"}
{"sample":"hCoV-19/Scotland/CVR2685/2020|EPI_ISL_484639|2020-04-17","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/CVR2685/2020|EPI_ISL_484639|2020-04-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR2685/2020|EPI_ISL_484639|2020-04-17","refpos":"10798","refvar":"C","qvar":"A","qpos":"10744","qlength":"29782","protein":"NSP5","variant":"D248E","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR2685/2020|EPI_ISL_484639|2020-04-17","refpos":"13862","refvar":"C","qvar":"T","qpos":"13808","qlength":"29782","protein":"NSP12b","variant":"T132I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR2685/2020|EPI_ISL_484639|2020-04-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR2685/2020|EPI_ISL_484639|2020-04-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/CVR2685/2020|EPI_ISL_484639|2020-04-17","refpos":"28836","refvar":"C","qvar":"T","qpos":"28782","qlength":"29782","protein":"N","variant":"S188L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/CVR2752/2020|EPI_ISL_478028|2020-04-18","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/CVR2752/2020|EPI_ISL_478028|2020-04-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR2752/2020|EPI_ISL_478028|2020-04-18","refpos":"10798","refvar":"C","qvar":"A","qpos":"10744","qlength":"29782","protein":"NSP5","variant":"D248E","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR2752/2020|EPI_ISL_478028|2020-04-18","refpos":"13862","refvar":"C","qvar":"T","qpos":"13808","qlength":"29782","protein":"NSP12b","variant":"T132I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR2752/2020|EPI_ISL_478028|2020-04-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR2752/2020|EPI_ISL_478028|2020-04-18","refpos":"19170","refvar":"C","qvar":"T","qpos":"19116","qlength":"29782","protein":"NSP14","variant":"F377F","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Scotland/CVR2752/2020|EPI_ISL_478028|2020-04-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/CVR2752/2020|EPI_ISL_478028|2020-04-18","refpos":"28836","refvar":"C","qvar":"T","qpos":"28782","qlength":"29782","protein":"N","variant":"S188L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/CVR3049/2020|EPI_ISL_461637|2020-04-24","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29784","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/CVR3049/2020|EPI_ISL_461637|2020-04-24","refpos":"1912","refvar":"C","qvar":"T","qpos":"1858","qlength":"29784","protein":"NSP2","variant":"S369S","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Scotland/CVR3049/2020|EPI_ISL_461637|2020-04-24","refpos":"2022","refvar":"T","qvar":"C","qpos":"1968","qlength":"29784","protein":"NSP2","variant":"F406S","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Scotland/CVR3049/2020|EPI_ISL_461637|2020-04-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29784","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR3049/2020|EPI_ISL_461637|2020-04-24","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29784","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR3049/2020|EPI_ISL_461637|2020-04-24","refpos":"17146","refvar":"A","qvar":"T","qpos":"17092","qlength":"29784","protein":"NSP13","variant":"I304L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Scotland/CVR3049/2020|EPI_ISL_461637|2020-04-24","refpos":"19955","refvar":"C","qvar":"T","qpos":"19901","qlength":"29784","protein":"NSP15","variant":"T112I","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/Scotland/CVR3049/2020|EPI_ISL_461637|2020-04-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29784","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/CVR3049/2020|EPI_ISL_461637|2020-04-24","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29784","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/CVR3629/2020|EPI_ISL_478079|2020-05-24","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/CVR3629/2020|EPI_ISL_478079|2020-05-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR3629/2020|EPI_ISL_478079|2020-05-24","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR3629/2020|EPI_ISL_478079|2020-05-24","refpos":"15324","refvar":"C","qvar":"T","qpos":"15270","qlength":"29782","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR3629/2020|EPI_ISL_478079|2020-05-24","refpos":"18380","refvar":"G","qvar":"T","qpos":"18326","qlength":"29782","protein":"NSP14","variant":"G114V","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Scotland/CVR3629/2020|EPI_ISL_478079|2020-05-24","refpos":"19542","refvar":"G","qvar":"T","qpos":"19488","qlength":"29782","protein":"NSP14","variant":"M501I","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Scotland/CVR3629/2020|EPI_ISL_478079|2020-05-24","refpos":"20679","refvar":"G","qvar":"A","qpos":"20625","qlength":"29782","protein":"NSP16","variant":"P7P","varclass":"SNP_silent","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/Scotland/CVR3629/2020|EPI_ISL_478079|2020-05-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/CVR3629/2020|EPI_ISL_478079|2020-05-24","refpos":"27576","refvar":"T","qvar":"G","qpos":"27522","qlength":"29782","protein":"ORF7a","variant":"T61T","varclass":"SNP_silent","annotation":"ORF7a protein"}
{"sample":"hCoV-19/Scotland/CVR3791/2020|EPI_ISL_478119|2020-06-02","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/CVR3791/2020|EPI_ISL_478119|2020-06-02","refpos":"2574","refvar":"C","qvar":"T","qpos":"2520","qlength":"29782","protein":"NSP2","variant":"T590I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Scotland/CVR3791/2020|EPI_ISL_478119|2020-06-02","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR3791/2020|EPI_ISL_478119|2020-06-02","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR3791/2020|EPI_ISL_478119|2020-06-02","refpos":"22879","refvar":"C","qvar":"A","qpos":"22825","qlength":"29782","protein":"S","variant":"N439K","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/CVR3791/2020|EPI_ISL_478119|2020-06-02","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/CVR826/2020|EPI_ISL_433347|2020-03-27","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/CVR826/2020|EPI_ISL_433347|2020-03-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR826/2020|EPI_ISL_433347|2020-03-27","refpos":"3831","refvar":"G","qvar":"A","qpos":"3777","qlength":"29782","protein":"NSP3","variant":"S371N","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR826/2020|EPI_ISL_433347|2020-03-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR826/2020|EPI_ISL_433347|2020-03-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB083/2020|EPI_ISL_425875|2020-03-21","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB083/2020|EPI_ISL_425875|2020-03-21","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB083/2020|EPI_ISL_425875|2020-03-21","refpos":"14079","refvar":"T","qvar":"C","qpos":"14079","qlength":"29903","protein":"NSP12b","variant":"N204N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB083/2020|EPI_ISL_425875|2020-03-21","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB083/2020|EPI_ISL_425875|2020-03-21","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB083/2020|EPI_ISL_425875|2020-03-21","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/EDB1168/2020|EPI_ISL_433418|2020-04-08","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB1168/2020|EPI_ISL_433418|2020-04-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB1168/2020|EPI_ISL_433418|2020-04-08","refpos":"4423","refvar":"C","qvar":"T","qpos":"4423","qlength":"29903","protein":"NSP3","variant":"R568R","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB1168/2020|EPI_ISL_433418|2020-04-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB1168/2020|EPI_ISL_433418|2020-04-08","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Scotland/EDB1168/2020|EPI_ISL_433418|2020-04-08","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB1168/2020|EPI_ISL_433418|2020-04-08","refpos":"24797","refvar":"C","qvar":"T","qpos":"24797","qlength":"29903","protein":"S","variant":"P1079S","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB1168/2020|EPI_ISL_433418|2020-04-08","refpos":"29734","refvar":"G","qvar":"C","qpos":"29734","qlength":"29903","protein":"3'UTR","variant":"29734","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB1510/2020|EPI_ISL_433463|2020-04-12","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB1510/2020|EPI_ISL_433463|2020-04-12","refpos":"2987","refvar":"T","qvar":"C","qpos":"2987","qlength":"29903","protein":"NSP3","variant":"F90L","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB1510/2020|EPI_ISL_433463|2020-04-12","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB1510/2020|EPI_ISL_433463|2020-04-12","refpos":"3215","refvar":"A","qvar":"G","qpos":"3215","qlength":"29903","protein":"NSP3","variant":"S166G","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB1510/2020|EPI_ISL_433463|2020-04-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB1510/2020|EPI_ISL_433463|2020-04-12","refpos":"15438","refvar":"G","qvar":"T","qpos":"15438","qlength":"29903","protein":"NSP12b","variant":"M657I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB1510/2020|EPI_ISL_433463|2020-04-12","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Scotland/EDB1510/2020|EPI_ISL_433463|2020-04-12","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB1642/2020|EPI_ISL_433101|2020-04-14","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB1642/2020|EPI_ISL_433101|2020-04-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB1642/2020|EPI_ISL_433101|2020-04-14","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB1642/2020|EPI_ISL_433101|2020-04-14","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB1642/2020|EPI_ISL_433101|2020-04-14","refpos":"25433","refvar":"C","qvar":"T","qpos":"25433","qlength":"29903","protein":"ORF3a","variant":"T14I","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/EDB2011/2020|EPI_ISL_433162|2020-04-18","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB2011/2020|EPI_ISL_433162|2020-04-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB2011/2020|EPI_ISL_433162|2020-04-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB2011/2020|EPI_ISL_433162|2020-04-18","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Scotland/EDB2011/2020|EPI_ISL_433162|2020-04-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB2011/2020|EPI_ISL_433162|2020-04-18","refpos":"28854","refvar":"C","qvar":"T","qpos":"28854","qlength":"29903","protein":"N","variant":"S194L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/EDB2011/2020|EPI_ISL_433162|2020-04-18","refpos":"29543","refvar":"G","qvar":"C","qpos":"29543","qlength":"29903","protein":"intergenic","variant":"29543","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"2215","refvar":"A","qvar":"G","qpos":"2161","qlength":"29782","protein":"NSP2","variant":"K470K","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"10874","refvar":"A","qvar":"G","qpos":"10820","qlength":"29782","protein":"NSP5","variant":"N274D","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"12823","refvar":"C","qvar":"T","qpos":"12769","qlength":"29782","protein":"NSP9","variant":"S46S","varclass":"SNP_silent","annotation":"ssRNA-binding protein"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"25429","refvar":"G","qvar":"T","qpos":"25375","qlength":"29782","protein":"ORF3a","variant":"V13L","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"25440","refvar":"G","qvar":"A","qpos":"25386","qlength":"29782","protein":"ORF3a","variant":"K16K","varclass":"SNP_silent","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"25916","refvar":"C","qvar":"T","qpos":"25862","qlength":"29782","protein":"ORF3a","variant":"T175I","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/EDB2054/2020|EPI_ISL_491599|2020-04-18","refpos":"26677","refvar":"T","qvar":"C","qpos":"26623","qlength":"29782","protein":"M","variant":"I52T","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Scotland/EDB273/2020|EPI_ISL_425959|2020-03-26","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB273/2020|EPI_ISL_425959|2020-03-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB273/2020|EPI_ISL_425959|2020-03-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB273/2020|EPI_ISL_425959|2020-03-26","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Scotland/EDB273/2020|EPI_ISL_425959|2020-03-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB273/2020|EPI_ISL_425959|2020-03-26","refpos":"29734","refvar":"G","qvar":"C","qpos":"29734","qlength":"29903","protein":"3'UTR","variant":"29734","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB2846/2020|EPI_ISL_488909|2020-03-31","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB2846/2020|EPI_ISL_488909|2020-03-31","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB2846/2020|EPI_ISL_488909|2020-03-31","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB2846/2020|EPI_ISL_488909|2020-03-31","refpos":"21861","refvar":"T","qvar":"C","qpos":"21807","qlength":"29782","protein":"S","variant":"I100T","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB2846/2020|EPI_ISL_488909|2020-03-31","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB2846/2020|EPI_ISL_488909|2020-03-31","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/EDB2869/2020|EPI_ISL_488931|2020-04-01","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB2869/2020|EPI_ISL_488931|2020-04-01","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB2869/2020|EPI_ISL_488931|2020-04-01","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB2869/2020|EPI_ISL_488931|2020-04-01","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB2869/2020|EPI_ISL_488931|2020-04-01","refpos":"25429","refvar":"G","qvar":"T","qpos":"25375","qlength":"29782","protein":"ORF3a","variant":"V13L","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/EDB2900/2020|EPI_ISL_456904|2020-04-01","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB2900/2020|EPI_ISL_456904|2020-04-01","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB2900/2020|EPI_ISL_456904|2020-04-01","refpos":"10798","refvar":"C","qvar":"A","qpos":"10798","qlength":"29903","protein":"NSP5","variant":"D248E","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB2900/2020|EPI_ISL_456904|2020-04-01","refpos":"13862","refvar":"C","qvar":"T","qpos":"13862","qlength":"29903","protein":"NSP12b","variant":"T132I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB2900/2020|EPI_ISL_456904|2020-04-01","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB2900/2020|EPI_ISL_456904|2020-04-01","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB2900/2020|EPI_ISL_456904|2020-04-01","refpos":"28836","refvar":"C","qvar":"T","qpos":"28836","qlength":"29903","protein":"N","variant":"S188L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/EDB3063/2020|EPI_ISL_489045|2020-04-04","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB3063/2020|EPI_ISL_489045|2020-04-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB3063/2020|EPI_ISL_489045|2020-04-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB3063/2020|EPI_ISL_489045|2020-04-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB3064/2020|EPI_ISL_487740|2020-04-04","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB3064/2020|EPI_ISL_487740|2020-04-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB3064/2020|EPI_ISL_487740|2020-04-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB3064/2020|EPI_ISL_487740|2020-04-04","refpos":"16289","refvar":"C","qvar":"T","qpos":"16235","qlength":"29782","protein":"NSP13","variant":"A18V","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Scotland/EDB3064/2020|EPI_ISL_487740|2020-04-04","refpos":"19009","refvar":"G","qvar":"T","qpos":"18955","qlength":"29782","protein":"NSP14","variant":"D324Y","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Scotland/EDB3064/2020|EPI_ISL_487740|2020-04-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB3064/2020|EPI_ISL_487740|2020-04-04","refpos":"25429","refvar":"G","qvar":"T","qpos":"25375","qlength":"29782","protein":"ORF3a","variant":"V13L","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/EDB4235/2020|EPI_ISL_453116|2020-04-21","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB4235/2020|EPI_ISL_453116|2020-04-21","refpos":"784","refvar":"C","qvar":"T","qpos":"784","qlength":"29903","protein":"NSP1","variant":"L173L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/Scotland/EDB4235/2020|EPI_ISL_453116|2020-04-21","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB4235/2020|EPI_ISL_453116|2020-04-21","refpos":"10798","refvar":"C","qvar":"A","qpos":"10798","qlength":"29903","protein":"NSP5","variant":"D248E","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB4235/2020|EPI_ISL_453116|2020-04-21","refpos":"13862","refvar":"C","qvar":"T","qpos":"13862","qlength":"29903","protein":"NSP12b","variant":"T132I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB4235/2020|EPI_ISL_453116|2020-04-21","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB4235/2020|EPI_ISL_453116|2020-04-21","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB4235/2020|EPI_ISL_453116|2020-04-21","refpos":"28836","refvar":"C","qvar":"T","qpos":"28836","qlength":"29903","protein":"N","variant":"S188L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/EDB4235/2020|EPI_ISL_453116|2020-04-21","refpos":"29777","refvar":"G","qvar":"A","qpos":"29777","qlength":"29903","protein":"3'UTR","variant":"29777","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB4366/2020|EPI_ISL_449299|2020-04-25","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB4366/2020|EPI_ISL_449299|2020-04-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB4366/2020|EPI_ISL_449299|2020-04-25","refpos":"9223","refvar":"C","qvar":"T","qpos":"9223","qlength":"29903","protein":"NSP4","variant":"H223H","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Scotland/EDB4366/2020|EPI_ISL_449299|2020-04-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB4366/2020|EPI_ISL_449299|2020-04-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB5436/2020|EPI_ISL_473818|2020-04-11","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB5436/2020|EPI_ISL_473818|2020-04-11","refpos":"2841","refvar":"C","qvar":"T","qpos":"2841","qlength":"29903","protein":"NSP3","variant":"A41V","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB5436/2020|EPI_ISL_473818|2020-04-11","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB5436/2020|EPI_ISL_473818|2020-04-11","refpos":"10798","refvar":"C","qvar":"A","qpos":"10798","qlength":"29903","protein":"NSP5","variant":"D248E","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB5436/2020|EPI_ISL_473818|2020-04-11","refpos":"13862","refvar":"C","qvar":"T","qpos":"13862","qlength":"29903","protein":"NSP12b","variant":"T132I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB5436/2020|EPI_ISL_473818|2020-04-11","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB5436/2020|EPI_ISL_473818|2020-04-11","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB5436/2020|EPI_ISL_473818|2020-04-11","refpos":"28836","refvar":"C","qvar":"T","qpos":"28836","qlength":"29903","protein":"N","variant":"S188L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/EDB5634/2020|EPI_ISL_487828|2020-03-23","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB5634/2020|EPI_ISL_487828|2020-03-23","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB5634/2020|EPI_ISL_487828|2020-03-23","refpos":"10798","refvar":"C","qvar":"A","qpos":"10744","qlength":"29782","protein":"NSP5","variant":"D248E","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB5634/2020|EPI_ISL_487828|2020-03-23","refpos":"13862","refvar":"C","qvar":"T","qpos":"13808","qlength":"29782","protein":"NSP12b","variant":"T132I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB5634/2020|EPI_ISL_487828|2020-03-23","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB5634/2020|EPI_ISL_487828|2020-03-23","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB5634/2020|EPI_ISL_487828|2020-03-23","refpos":"28836","refvar":"C","qvar":"T","qpos":"28782","qlength":"29782","protein":"N","variant":"S188L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"10798","refvar":"C","qvar":"A","qpos":"10744","qlength":"29782","protein":"NSP5","variant":"D248E","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"13862","refvar":"C","qvar":"T","qpos":"13808","qlength":"29782","protein":"NSP12b","variant":"T132I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"24998","refvar":"G","qvar":"C","qpos":"24944","qlength":"29782","protein":"S","variant":"D1146H","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"25580","refvar":"T","qvar":"C","qpos":"25526","qlength":"29782","protein":"ORF3a","variant":"I63T","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"28836","refvar":"C","qvar":"T","qpos":"28782","qlength":"29782","protein":"N","variant":"S188L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/EDB5980/2020|EPI_ISL_487798|2020-05-04","refpos":"29640","refvar":"C","qvar":"T","qpos":"29586","qlength":"29782","protein":"ORF10","variant":"A28V","varclass":"SNP","annotation":"ORF10 protein"}
{"sample":"hCoV-19/Scotland/EDB6333/2020|EPI_ISL_473940|2020-06-04","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB6333/2020|EPI_ISL_473940|2020-06-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB6333/2020|EPI_ISL_473940|2020-06-04","refpos":"6472","refvar":"C","qvar":"T","qpos":"6472","qlength":"29903","protein":"NSP3","variant":"T1251T","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB6333/2020|EPI_ISL_473940|2020-06-04","refpos":"7815","refvar":"C","qvar":"T","qpos":"7815","qlength":"29903","protein":"NSP3","variant":"S1699F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB6333/2020|EPI_ISL_473940|2020-06-04","refpos":"13684","refvar":"C","qvar":"T","qpos":"13684","qlength":"29903","protein":"NSP12b","variant":"H73Y","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB6333/2020|EPI_ISL_473940|2020-06-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB6333/2020|EPI_ISL_473940|2020-06-04","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Scotland/EDB6333/2020|EPI_ISL_473940|2020-06-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB910/2020|EPI_ISL_432875|2020-04-06","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/EDB910/2020|EPI_ISL_432875|2020-04-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB910/2020|EPI_ISL_432875|2020-04-06","refpos":"3911","refvar":"A","qvar":"G","qpos":"3911","qlength":"29903","protein":"NSP3","variant":"T398A","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/EDB910/2020|EPI_ISL_432875|2020-04-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/EDB910/2020|EPI_ISL_432875|2020-04-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/EDB910/2020|EPI_ISL_432875|2020-04-06","refpos":"26028","refvar":"C","qvar":"T","qpos":"26028","qlength":"29903","protein":"ORF3a","variant":"Y212Y","varclass":"SNP_silent","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/GCVR-170732/2020|EPI_ISL_489638|2020-03-26","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/GCVR-170732/2020|EPI_ISL_489638|2020-03-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/GCVR-170732/2020|EPI_ISL_489638|2020-03-26","refpos":"3792","refvar":"C","qvar":"T","qpos":"3738","qlength":"29782","protein":"NSP3","variant":"A358V","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/GCVR-170732/2020|EPI_ISL_489638|2020-03-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/GCVR-170732/2020|EPI_ISL_489638|2020-03-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/GCVR-170732/2020|EPI_ISL_489638|2020-03-26","refpos":"24223","refvar":"C","qvar":"T","qpos":"24169","qlength":"29782","protein":"S","variant":"T887T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/GCVR-171072/2020|EPI_ISL_459670|2020-03-27","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/GCVR-171072/2020|EPI_ISL_459670|2020-03-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/GCVR-171072/2020|EPI_ISL_459670|2020-03-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/GCVR-171072/2020|EPI_ISL_459670|2020-03-27","refpos":"16289","refvar":"C","qvar":"T","qpos":"16235","qlength":"29782","protein":"NSP13","variant":"A18V","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Scotland/GCVR-171072/2020|EPI_ISL_459670|2020-03-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/GCVR-171072/2020|EPI_ISL_459670|2020-03-27","refpos":"25429","refvar":"G","qvar":"T","qpos":"25375","qlength":"29782","protein":"ORF3a","variant":"V13L","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/GCVR-172053/2020|EPI_ISL_470005|2020-03-30","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Scotland/GCVR-172053/2020|EPI_ISL_470005|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/GCVR-172053/2020|EPI_ISL_470005|2020-03-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/GCVR-172053/2020|EPI_ISL_470005|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Scotland/GCVR-172053/2020|EPI_ISL_470005|2020-03-30","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Singapore/177/2020|EPI_ISL_462295|2020-03-21","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29891","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Singapore/177/2020|EPI_ISL_462295|2020-03-21","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29891","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Singapore/177/2020|EPI_ISL_462295|2020-03-21","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29891","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Singapore/177/2020|EPI_ISL_462295|2020-03-21","refpos":"12514","refvar":"G","qvar":"T","qpos":"12514","qlength":"29891","protein":"NSP8","variant":"T141T","varclass":"SNP_silent","annotation":"Non-Structural protein 8"}
{"sample":"hCoV-19/Singapore/177/2020|EPI_ISL_462295|2020-03-21","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29891","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Singapore/177/2020|EPI_ISL_462295|2020-03-21","refpos":"15380","refvar":"G","qvar":"T","qpos":"15380","qlength":"29891","protein":"NSP12b","variant":"S638I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Singapore/177/2020|EPI_ISL_462295|2020-03-21","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29891","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Singapore/177/2020|EPI_ISL_462295|2020-03-21","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29891","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Spain/Albacete-COV003767/2020|EPI_ISL_474804|2020-04-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Spain/Albacete-COV003767/2020|EPI_ISL_474804|2020-04-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Spain/Albacete-COV003767/2020|EPI_ISL_474804|2020-04-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Spain/Albacete-COV003767/2020|EPI_ISL_474804|2020-04-03","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Spain/Albacete-COV003767/2020|EPI_ISL_474804|2020-04-03","refpos":"20634","refvar":"A","qvar":"G","qpos":"20634","qlength":"29903","protein":"NSP15","variant":"V338V","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Spain/Albacete-COV003767/2020|EPI_ISL_474804|2020-04-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Spain/COV000933/2020|EPI_ISL_452639|2020-03-27","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Spain/COV000933/2020|EPI_ISL_452639|2020-03-27","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Spain/COV000933/2020|EPI_ISL_452639|2020-03-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Spain/COV000933/2020|EPI_ISL_452639|2020-03-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Spain/COV000933/2020|EPI_ISL_452639|2020-03-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Spain/COV000933/2020|EPI_ISL_452639|2020-03-27","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Spain/COV003687/2020|EPI_ISL_467186|2020-04-02","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Spain/COV003687/2020|EPI_ISL_467186|2020-04-02","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Spain/COV003687/2020|EPI_ISL_467186|2020-04-02","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Spain/COV003687/2020|EPI_ISL_467186|2020-04-02","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Spain/COV003687/2020|EPI_ISL_467186|2020-04-02","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Spain/COV003687/2020|EPI_ISL_467186|2020-04-02","refpos":"28000","refvar":"C","qvar":"T","qpos":"28000","qlength":"29903","protein":"ORF8","variant":"P36L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/Spain/COV003687/2020|EPI_ISL_467186|2020-04-02","refpos":"28985","refvar":"G","qvar":"T","qpos":"28985","qlength":"29903","protein":"N","variant":"G238C","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Spain/Donostia-San_Sebastian_COV003248/2020|EPI_ISL_480984|2020-03-17","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Spain/Donostia-San_Sebastian_COV003248/2020|EPI_ISL_480984|2020-03-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Spain/Donostia-San_Sebastian_COV003248/2020|EPI_ISL_480984|2020-03-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Spain/Donostia-San_Sebastian_COV003248/2020|EPI_ISL_480984|2020-03-17","refpos":"20268","refvar":"A","qvar":"G","qpos":"20268","qlength":"29903","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Spain/Donostia-San_Sebastian_COV003248/2020|EPI_ISL_480984|2020-03-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Spain/Madrid_H8_37/2020|EPI_ISL_418182|2020-03-12","refpos":"241","refvar":"C","qvar":"T","qpos":"201","qlength":"29784","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Spain/Madrid_H8_37/2020|EPI_ISL_418182|2020-03-12","refpos":"3037","refvar":"C","qvar":"T","qpos":"2997","qlength":"29784","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Spain/Madrid_H8_37/2020|EPI_ISL_418182|2020-03-12","refpos":"11704","refvar":"C","qvar":"T","qpos":"11664","qlength":"29784","protein":"NSP6","variant":"Y244Y","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Spain/Madrid_H8_37/2020|EPI_ISL_418182|2020-03-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14368","qlength":"29784","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Spain/Madrid_H8_37/2020|EPI_ISL_418182|2020-03-12","refpos":"20268","refvar":"A","qvar":"G","qpos":"20228","qlength":"29784","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Spain/Madrid_H8_37/2020|EPI_ISL_418182|2020-03-12","refpos":"23403","refvar":"A","qvar":"G","qpos":"23363","qlength":"29784","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Spain/Madrid_H8_37/2020|EPI_ISL_418182|2020-03-12","refpos":"29544","refvar":"ACCACACAAGGCAGATGGGCTATATAAACGTTTTC","qvar":".","qpos":"29503","qlength":"29784","protein":"intergenic","variant":"29544","varclass":"extragenic"}
{"sample":"hCoV-19/Spain/Madrid_H8_37/2020|EPI_ISL_418182|2020-03-12","refpos":"29734","refvar":"G","qvar":"C","qpos":"29659","qlength":"29784","protein":"3'UTR","variant":"29734","varclass":"extragenic"}
{"sample":"hCoV-19/Spain/Valencia44/2020|EPI_ISL_420128|2020-03-12","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Spain/Valencia44/2020|EPI_ISL_420128|2020-03-12","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Spain/Valencia44/2020|EPI_ISL_420128|2020-03-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Spain/Valencia44/2020|EPI_ISL_420128|2020-03-12","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Spain/Valencia44/2020|EPI_ISL_420128|2020-03-12","refpos":"29144","refvar":"C","qvar":"T","qpos":"29090","qlength":"29782","protein":"N","variant":"E290E","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Spain/Valencia65/2020|EPI_ISL_425189|2020-03-16","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Spain/Valencia65/2020|EPI_ISL_425189|2020-03-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Spain/Valencia65/2020|EPI_ISL_425189|2020-03-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Spain/Valencia65/2020|EPI_ISL_425189|2020-03-16","refpos":"17126","refvar":"T","qvar":"C","qpos":"17072","qlength":"29782","protein":"NSP13","variant":"L297P","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Spain/Valencia65/2020|EPI_ISL_425189|2020-03-16","refpos":"17746","refvar":"C","qvar":"T","qpos":"17692","qlength":"29782","protein":"NSP13","variant":"P504S","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Spain/Valencia65/2020|EPI_ISL_425189|2020-03-16","refpos":"20268","refvar":"A","qvar":"G","qpos":"20214","qlength":"29782","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Spain/Valencia65/2020|EPI_ISL_425189|2020-03-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"3896","refvar":"G","qvar":"T","qpos":"3896","qlength":"29903","protein":"NSP3","variant":"V393F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"4457","refvar":"A","qvar":"G","qpos":"4457","qlength":"29903","protein":"NSP3","variant":"I580V","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"7165","refvar":"C","qvar":"T","qpos":"7165","qlength":"29903","protein":"NSP3","variant":"T1482T","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"24368","refvar":"G","qvar":"T","qpos":"24368","qlength":"29903","protein":"S","variant":"D936Y","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-07440/2020|EPI_ISL_434671|2020-04-16","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Sweden/20-08117/2020|EPI_ISL_455847|2020-03-09","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Sweden/20-08117/2020|EPI_ISL_455847|2020-03-09","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-08117/2020|EPI_ISL_455847|2020-03-09","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Sweden/20-08117/2020|EPI_ISL_455847|2020-03-09","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-14089/2020|EPI_ISL_450827|2020-04-27","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Sweden/20-14089/2020|EPI_ISL_450827|2020-04-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-14089/2020|EPI_ISL_450827|2020-04-27","refpos":"11416","refvar":"C","qvar":"T","qpos":"11416","qlength":"29903","protein":"NSP6","variant":"L148L","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Sweden/20-14089/2020|EPI_ISL_450827|2020-04-27","refpos":"14396","refvar":"C","qvar":"T","qpos":"14396","qlength":"29903","protein":"NSP12b","variant":"T310I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Sweden/20-14089/2020|EPI_ISL_450827|2020-04-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Sweden/20-14089/2020|EPI_ISL_450827|2020-04-27","refpos":"21802","refvar":"T","qvar":"C","qpos":"21802","qlength":"29903","protein":"S","variant":"D80D","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-14089/2020|EPI_ISL_450827|2020-04-27","refpos":"22208","refvar":"C","qvar":"T","qpos":"22208","qlength":"29903","protein":"S","variant":"L216F","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-14089/2020|EPI_ISL_450827|2020-04-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-14089/2020|EPI_ISL_450827|2020-04-27","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"8962","refvar":"A","qvar":"G","qpos":"8962","qlength":"29903","protein":"NSP4","variant":"P136P","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"16242","refvar":"T","qvar":"A","qpos":"16242","qlength":"29903","protein":"NSP13","variant":"V2V","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"17674","refvar":"A","qvar":"G","qpos":"17674","qlength":"29903","protein":"NSP13","variant":"I480V","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"18032","refvar":"C","qvar":"T","qpos":"18032","qlength":"29903","protein":"NSP13","variant":"T599I","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"25585","refvar":"C","qvar":"T","qpos":"25585","qlength":"29903","protein":"ORF3a","variant":"L65F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"26957","refvar":"T","qvar":"C","qpos":"26957","qlength":"29903","protein":"M","variant":"L145L","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/Sweden/20-14828/2020|EPI_ISL_475521|2020-05-19","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"1466","refvar":"G","qvar":"A","qpos":"1466","qlength":"29903","protein":"NSP2","variant":"G221S","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"3784","refvar":"C","qvar":"T","qpos":"3784","qlength":"29903","protein":"NSP3","variant":"V355V","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"5665","refvar":"G","qvar":"A","qpos":"5665","qlength":"29903","protein":"NSP3","variant":"Q982Q","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"12142","refvar":"T","qvar":"C","qpos":"12142","qlength":"29903","protein":"NSP8","variant":"T17T","varclass":"SNP_silent","annotation":"Non-Structural protein 8"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"24023","refvar":"C","qvar":"T","qpos":"24023","qlength":"29903","protein":"S","variant":"D820D","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"25936","refvar":"C","qvar":"T","qpos":"25936","qlength":"29903","protein":"ORF3a","variant":"H182Y","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Sweden/20-19192/2020|EPI_ISL_469065|2020-05-28","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Sweden/20-50529/2020|EPI_ISL_475145|2020-03-30","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Sweden/20-50529/2020|EPI_ISL_475145|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-50529/2020|EPI_ISL_475145|2020-03-30","refpos":"3689","refvar":"G","qvar":"A","qpos":"3689","qlength":"29903","protein":"NSP3","variant":"E324K","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Sweden/20-50529/2020|EPI_ISL_475145|2020-03-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Sweden/20-50529/2020|EPI_ISL_475145|2020-03-30","refpos":"23086","refvar":"C","qvar":"T","qpos":"23086","qlength":"29903","protein":"S","variant":"Y508Y","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-50529/2020|EPI_ISL_475145|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Sweden/20-50529/2020|EPI_ISL_475145|2020-03-30","refpos":"27046","refvar":"C","qvar":"T","qpos":"27046","qlength":"29903","protein":"M","variant":"T175M","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Sweden/20-50529/2020|EPI_ISL_475145|2020-03-30","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Switzerland/100011/2020|EPI_ISL_466936|2020-03-06","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Switzerland/100011/2020|EPI_ISL_466936|2020-03-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/100011/2020|EPI_ISL_466936|2020-03-06","refpos":"12896","refvar":"C","qvar":"T","qpos":"12896","qlength":"29903","protein":"NSP9","variant":"P71S","varclass":"SNP","annotation":"ssRNA-binding protein"}
{"sample":"hCoV-19/Switzerland/100011/2020|EPI_ISL_466936|2020-03-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/100011/2020|EPI_ISL_466936|2020-03-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Switzerland/100128/2020|EPI_ISL_451712|2020-03-16","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Switzerland/100128/2020|EPI_ISL_451712|2020-03-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/100128/2020|EPI_ISL_451712|2020-03-16","refpos":"13862","refvar":"C","qvar":"T","qpos":"13862","qlength":"29903","protein":"NSP12b","variant":"T132I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/100128/2020|EPI_ISL_451712|2020-03-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/100128/2020|EPI_ISL_451712|2020-03-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Switzerland/100128/2020|EPI_ISL_451712|2020-03-16","refpos":"28836","refvar":"C","qvar":"T","qpos":"28836","qlength":"29903","protein":"N","variant":"S188L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Switzerland/100129/2020|EPI_ISL_451713|2020-03-16","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Switzerland/100129/2020|EPI_ISL_451713|2020-03-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/100129/2020|EPI_ISL_451713|2020-03-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/100129/2020|EPI_ISL_451713|2020-03-16","refpos":"15324","refvar":"C","qvar":"T","qpos":"15324","qlength":"29903","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/100129/2020|EPI_ISL_451713|2020-03-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Switzerland/100132/2020|EPI_ISL_451716|2020-03-16","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Switzerland/100132/2020|EPI_ISL_451716|2020-03-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/100132/2020|EPI_ISL_451716|2020-03-16","refpos":"3373","refvar":"C","qvar":"A","qpos":"3373","qlength":"29903","protein":"NSP3","variant":"D218E","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/100132/2020|EPI_ISL_451716|2020-03-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/100132/2020|EPI_ISL_451716|2020-03-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Switzerland/100132/2020|EPI_ISL_451716|2020-03-16","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Switzerland/100791/2020|EPI_ISL_451741|2020-03-25","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Switzerland/100791/2020|EPI_ISL_451741|2020-03-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/100791/2020|EPI_ISL_451741|2020-03-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/100791/2020|EPI_ISL_451741|2020-03-25","refpos":"19363","refvar":"T","qvar":"G","qpos":"19363","qlength":"29903","protein":"NSP14","variant":"L442V","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Switzerland/100791/2020|EPI_ISL_451741|2020-03-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Switzerland/140069/2020|EPI_ISL_476117|2020-04-29","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Switzerland/140069/2020|EPI_ISL_476117|2020-04-29","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/140069/2020|EPI_ISL_476117|2020-04-29","refpos":"10893","refvar":"C","qvar":"T","qpos":"10893","qlength":"29903","protein":"NSP5","variant":"T280I","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Switzerland/140069/2020|EPI_ISL_476117|2020-04-29","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/140069/2020|EPI_ISL_476117|2020-04-29","refpos":"19690","refvar":"G","qvar":"T","qpos":"19690","qlength":"29903","protein":"NSP15","variant":"V24F","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/Switzerland/140069/2020|EPI_ISL_476117|2020-04-29","refpos":"20753","refvar":"A","qvar":"G","qpos":"20753","qlength":"29903","protein":"NSP16","variant":"D32G","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/Switzerland/140069/2020|EPI_ISL_476117|2020-04-29","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"241","refvar":"C","qvar":"T","qpos":"211","qlength":"29836","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"3037","refvar":"C","qvar":"T","qpos":"3007","qlength":"29836","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"3177","refvar":"C","qvar":"A","qpos":"3147","qlength":"29836","protein":"NSP3","variant":"P153H","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"4002","refvar":"C","qvar":"T","qpos":"3972","qlength":"29836","protein":"NSP3","variant":"T428I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"4917","refvar":"T","qvar":"C","qpos":"4887","qlength":"29836","protein":"NSP3","variant":"I733T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"13536","refvar":"C","qvar":"T","qpos":"13506","qlength":"29836","protein":"NSP12b","variant":"Y23Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"14408","refvar":"C","qvar":"T","qpos":"14378","qlength":"29836","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"14670","refvar":"C","qvar":"T","qpos":"14640","qlength":"29836","protein":"NSP12b","variant":"V401V","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"19732","refvar":"G","qvar":"T","qpos":"19702","qlength":"29836","protein":"NSP15","variant":"V38F","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"20461","refvar":"A","qvar":"G","qpos":"20431","qlength":"29836","protein":"NSP15","variant":"T281A","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"23403","refvar":"A","qvar":"G","qpos":"23373","qlength":"29836","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"23731","refvar":"C","qvar":"T","qpos":"23701","qlength":"29836","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Switzerland/180047_516_B07/2020|EPI_ISL_489983|2020-06-29","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28851","qlength":"29836","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Switzerland/GE5373/2020|EPI_ISL_414020|2020-02-27","refpos":"241","refvar":"C","qvar":"T","qpos":"230","qlength":"29865","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Switzerland/GE5373/2020|EPI_ISL_414020|2020-02-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3026","qlength":"29865","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Switzerland/GE5373/2020|EPI_ISL_414020|2020-02-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14397","qlength":"29865","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Switzerland/GE5373/2020|EPI_ISL_414020|2020-02-27","refpos":"20268","refvar":"A","qvar":"G","qpos":"20257","qlength":"29865","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Switzerland/GE5373/2020|EPI_ISL_414020|2020-02-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23392","qlength":"29865","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Thailand/Bangkok-0033/2020|EPI_ISL_429169|2020-03-17","refpos":"241","refvar":"C","qvar":"T","qpos":"212","qlength":"29870","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Thailand/Bangkok-0033/2020|EPI_ISL_429169|2020-03-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3008","qlength":"29870","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Thailand/Bangkok-0033/2020|EPI_ISL_429169|2020-03-17","refpos":"11355","refvar":"C","qvar":"T","qpos":"11326","qlength":"29870","protein":"NSP6","variant":"A128V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Thailand/Bangkok-0033/2020|EPI_ISL_429169|2020-03-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14379","qlength":"29870","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Thailand/Bangkok-0033/2020|EPI_ISL_429169|2020-03-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23374","qlength":"29870","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Thailand/Bangkok-0033/2020|EPI_ISL_429169|2020-03-17","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28852","qlength":"29870","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Turkey/HSGM-1081/2020|EPI_ISL_437310|2020-03-27","refpos":"241","refvar":"C","qvar":"T","qpos":"235","qlength":"29897","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Turkey/HSGM-1081/2020|EPI_ISL_437310|2020-03-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3031","qlength":"29897","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Turkey/HSGM-1081/2020|EPI_ISL_437310|2020-03-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14402","qlength":"29897","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Turkey/HSGM-1081/2020|EPI_ISL_437310|2020-03-27","refpos":"18877","refvar":"C","qvar":"T","qpos":"18871","qlength":"29897","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Turkey/HSGM-1081/2020|EPI_ISL_437310|2020-03-27","refpos":"22444","refvar":"C","qvar":"T","qpos":"22438","qlength":"29897","protein":"S","variant":"D294D","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Turkey/HSGM-1081/2020|EPI_ISL_437310|2020-03-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23397","qlength":"29897","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Turkey/HSGM-1081/2020|EPI_ISL_437310|2020-03-27","refpos":"25563","refvar":"G","qvar":"T","qpos":"25557","qlength":"29897","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Turkey/HSGM-1081/2020|EPI_ISL_437310|2020-03-27","refpos":"28854","refvar":"C","qvar":"T","qpos":"28848","qlength":"29897","protein":"N","variant":"S194L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Turkey/KU-003/2020|EPI_ISL_495413|2020-05-22","refpos":"241","refvar":"C","qvar":"T","qpos":"209","qlength":"29813","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Turkey/KU-003/2020|EPI_ISL_495413|2020-05-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3005","qlength":"29813","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Turkey/KU-003/2020|EPI_ISL_495413|2020-05-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14376","qlength":"29813","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Turkey/KU-003/2020|EPI_ISL_495413|2020-05-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23371","qlength":"29813","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Turkey/KU-003/2020|EPI_ISL_495413|2020-05-22","refpos":"24262","refvar":"G","qvar":"T","qpos":"24230","qlength":"29813","protein":"S","variant":"M900I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Turkey/KU-003/2020|EPI_ISL_495413|2020-05-22","refpos":"27703","refvar":"G","qvar":"T","qpos":"27671","qlength":"29813","protein":"ORF7a","variant":"V104F","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/Turkey/KU-003/2020|EPI_ISL_495413|2020-05-22","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28849","qlength":"29813","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/AZ-TG268099/2020|EPI_ISL_426500|2020-03-17","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29882","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/AZ-TG268099/2020|EPI_ISL_426500|2020-03-17","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29882","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/AZ-TG268099/2020|EPI_ISL_426500|2020-03-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29882","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/AZ-TG268099/2020|EPI_ISL_426500|2020-03-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29882","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/AZ-TG268099/2020|EPI_ISL_426500|2020-03-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29882","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/AZ-TG268099/2020|EPI_ISL_426500|2020-03-17","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29882","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/AZ-TG268099/2020|EPI_ISL_426500|2020-03-17","refpos":"27964","refvar":"C","qvar":"T","qpos":"27964","qlength":"29882","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/AZ-TG268281/2020|EPI_ISL_426503|2020-03-17","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29882","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/AZ-TG268281/2020|EPI_ISL_426503|2020-03-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29882","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/AZ-TG268281/2020|EPI_ISL_426503|2020-03-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29882","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/AZ-TG268281/2020|EPI_ISL_426503|2020-03-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29882","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/AZ-TG268417/2020|EPI_ISL_426508|2020-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29882","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/AZ-TG268417/2020|EPI_ISL_426508|2020-03","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29882","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/AZ-TG268417/2020|EPI_ISL_426508|2020-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29882","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/AZ-TG268417/2020|EPI_ISL_426508|2020-03","refpos":"11919","refvar":"C","qvar":"T","qpos":"11919","qlength":"29882","protein":"NSP7","variant":"S26F","varclass":"SNP","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/USA/AZ-TG268417/2020|EPI_ISL_426508|2020-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29882","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/AZ-TG268417/2020|EPI_ISL_426508|2020-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29882","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/AZ-TG268417/2020|EPI_ISL_426508|2020-03","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29882","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/AZ-TG268417/2020|EPI_ISL_426508|2020-03","refpos":"27382","refvar":"G","qvar":"T","qpos":"27382","qlength":"29882","protein":"ORF6","variant":"D61Y","varclass":"SNP","annotation":"ORF6 protein"}
{"sample":"hCoV-19/USA/AZ-TG269848/2020|EPI_ISL_426527|2020-03-17","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29882","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/AZ-TG269848/2020|EPI_ISL_426527|2020-03-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29882","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/AZ-TG269848/2020|EPI_ISL_426527|2020-03-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29882","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/AZ-TG269848/2020|EPI_ISL_426527|2020-03-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29882","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/AZ-TG269848/2020|EPI_ISL_426527|2020-03-17","refpos":"25905","refvar":"A","qvar":"T","qpos":"25905","qlength":"29882","protein":"ORF3a","variant":"S171S","varclass":"SNP_silent","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/AZ-TG273308/2020|EPI_ISL_426565|2020-04-01","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29882","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/AZ-TG273308/2020|EPI_ISL_426565|2020-04-01","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29882","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/AZ-TG273308/2020|EPI_ISL_426565|2020-04-01","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29882","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/AZ-TG273308/2020|EPI_ISL_426565|2020-04-01","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29882","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/AZ-TG273308/2020|EPI_ISL_426565|2020-04-01","refpos":"14747","refvar":"A","qvar":"G","qpos":"14747","qlength":"29882","protein":"NSP12b","variant":"E427G","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/AZ-TG273308/2020|EPI_ISL_426565|2020-04-01","refpos":"16658","refvar":"C","qvar":"T","qpos":"16658","qlength":"29882","protein":"NSP13","variant":"T141I","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/AZ-TG273308/2020|EPI_ISL_426565|2020-04-01","refpos":"20755","refvar":"A","qvar":"C","qpos":"20755","qlength":"29882","protein":"NSP16","variant":"S33R","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/USA/AZ-TG273308/2020|EPI_ISL_426565|2020-04-01","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29882","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/AZ-TG273308/2020|EPI_ISL_426565|2020-04-01","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29882","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"241","refvar":"C","qvar":"T","qpos":"237","qlength":"29899","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"379","refvar":"C","qvar":"A","qpos":"375","qlength":"29899","protein":"NSP1","variant":"V38V","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"1059","refvar":"C","qvar":"T","qpos":"1055","qlength":"29899","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"3033","qlength":"29899","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"4657","refvar":"G","qvar":"A","qpos":"4653","qlength":"29899","protein":"NSP3","variant":"R646R","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"13695","refvar":"A","qvar":"C","qpos":"13691","qlength":"29899","protein":"NSP12b","variant":"T76T","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14404","qlength":"29899","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"21578","refvar":"G","qvar":"T","qpos":"21574","qlength":"29899","protein":"S","variant":"V6F","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23399","qlength":"29899","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-ALSR-0610-IPL/2020|EPI_ISL_483255|2020-04-20","refpos":"25563","refvar":"G","qvar":"T","qpos":"25559","qlength":"29899","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"241","refvar":"C","qvar":"T","qpos":"236","qlength":"29898","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"1059","refvar":"C","qvar":"T","qpos":"1054","qlength":"29898","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"3037","refvar":"C","qvar":"T","qpos":"3032","qlength":"29898","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"10319","refvar":"C","qvar":"T","qpos":"10314","qlength":"29898","protein":"NSP5","variant":"L89F","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"14408","refvar":"C","qvar":"T","qpos":"14403","qlength":"29898","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"21214","refvar":"C","qvar":"T","qpos":"21209","qlength":"29898","protein":"NSP16","variant":"H186Y","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"23403","refvar":"A","qvar":"G","qpos":"23398","qlength":"29898","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"25563","refvar":"G","qvar":"T","qpos":"25558","qlength":"29898","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"27964","refvar":"C","qvar":"T","qpos":"27959","qlength":"29898","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/CA-ALSR-0850-NBG/2020|EPI_ISL_483398|2020-05-14","refpos":"29627","refvar":"C","qvar":"T","qpos":"29622","qlength":"29898","protein":"ORF10","variant":"R24C","varclass":"SNP","annotation":"ORF10 protein"}
{"sample":"hCoV-19/USA/CA-ALSR-0945-SAN/2020|EPI_ISL_483429|2020-03-28","refpos":"241","refvar":"C","qvar":"T","qpos":"192","qlength":"29854","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-ALSR-0945-SAN/2020|EPI_ISL_483429|2020-03-28","refpos":"1059","refvar":"C","qvar":"T","qpos":"1010","qlength":"29854","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-ALSR-0945-SAN/2020|EPI_ISL_483429|2020-03-28","refpos":"3037","refvar":"C","qvar":"T","qpos":"2988","qlength":"29854","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-0945-SAN/2020|EPI_ISL_483429|2020-03-28","refpos":"8252","refvar":"A","qvar":"G","qpos":"8203","qlength":"29854","protein":"NSP3","variant":"I1845V","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-0945-SAN/2020|EPI_ISL_483429|2020-03-28","refpos":"11083","refvar":"G","qvar":"T","qpos":"11034","qlength":"29854","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/CA-ALSR-0945-SAN/2020|EPI_ISL_483429|2020-03-28","refpos":"14408","refvar":"C","qvar":"T","qpos":"14359","qlength":"29854","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-ALSR-0945-SAN/2020|EPI_ISL_483429|2020-03-28","refpos":"23403","refvar":"A","qvar":"G","qpos":"23354","qlength":"29854","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-ALSR-0945-SAN/2020|EPI_ISL_483429|2020-03-28","refpos":"25563","refvar":"G","qvar":"T","qpos":"25514","qlength":"29854","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/CA-ALSR-1027-SAN/2020|EPI_ISL_483471|2020-04-09","refpos":"241","refvar":"C","qvar":"T","qpos":"240","qlength":"29902","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-ALSR-1027-SAN/2020|EPI_ISL_483471|2020-04-09","refpos":"920","refvar":"C","qvar":"T","qpos":"919","qlength":"29902","protein":"NSP2","variant":"Q38Q","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-ALSR-1027-SAN/2020|EPI_ISL_483471|2020-04-09","refpos":"3037","refvar":"C","qvar":"T","qpos":"3036","qlength":"29902","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-1027-SAN/2020|EPI_ISL_483471|2020-04-09","refpos":"14408","refvar":"C","qvar":"T","qpos":"14407","qlength":"29902","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-ALSR-1027-SAN/2020|EPI_ISL_483471|2020-04-09","refpos":"20268","refvar":"A","qvar":"G","qpos":"20267","qlength":"29902","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/CA-ALSR-1027-SAN/2020|EPI_ISL_483471|2020-04-09","refpos":"23403","refvar":"A","qvar":"G","qpos":"23402","qlength":"29902","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-ALSR-1027-SAN/2020|EPI_ISL_483471|2020-04-09","refpos":"28854","refvar":"C","qvar":"T","qpos":"28853","qlength":"29902","protein":"N","variant":"S194L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/CA-ALSR-1283/2020|EPI_ISL_494479|2020-05-06","refpos":"241","refvar":"C","qvar":"T","qpos":"192","qlength":"29854","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-ALSR-1283/2020|EPI_ISL_494479|2020-05-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"2988","qlength":"29854","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-1283/2020|EPI_ISL_494479|2020-05-06","refpos":"3418","refvar":"G","qvar":"T","qpos":"3369","qlength":"29854","protein":"NSP3","variant":"K233N","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-1283/2020|EPI_ISL_494479|2020-05-06","refpos":"10726","refvar":"C","qvar":"T","qpos":"10677","qlength":"29854","protein":"NSP5","variant":"T224T","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/CA-ALSR-1283/2020|EPI_ISL_494479|2020-05-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14359","qlength":"29854","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-ALSR-1283/2020|EPI_ISL_494479|2020-05-06","refpos":"20268","refvar":"A","qvar":"G","qpos":"20219","qlength":"29854","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/CA-ALSR-1283/2020|EPI_ISL_494479|2020-05-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23354","qlength":"29854","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-ALSR-1283/2020|EPI_ISL_494479|2020-05-06","refpos":"24095","refvar":"G","qvar":"T","qpos":"24046","qlength":"29854","protein":"S","variant":"A845S","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-ALSR-1283/2020|EPI_ISL_494479|2020-05-06","refpos":"28854","refvar":"C","qvar":"T","qpos":"28805","qlength":"29854","protein":"N","variant":"S194L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/CA-CZB-1221/2020|EPI_ISL_450470|2020-03-20","refpos":"241","refvar":"C","qvar":"T","qpos":"228","qlength":"29890","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-CZB-1221/2020|EPI_ISL_450470|2020-03-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"3024","qlength":"29890","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-CZB-1221/2020|EPI_ISL_450470|2020-03-20","refpos":"11566","refvar":"T","qvar":"A","qpos":"11553","qlength":"29890","protein":"NSP6","variant":"P198P","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/CA-CZB-1221/2020|EPI_ISL_450470|2020-03-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14395","qlength":"29890","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-CZB-1221/2020|EPI_ISL_450470|2020-03-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23390","qlength":"29890","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-CZB-1221/2020|EPI_ISL_450470|2020-03-20","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28868","qlength":"29890","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/CA-CZB-1437/2020|EPI_ISL_468407|2020-03-26","refpos":"241","refvar":"C","qvar":"T","qpos":"203","qlength":"29865","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-CZB-1437/2020|EPI_ISL_468407|2020-03-26","refpos":"833","refvar":"T","qvar":"C","qpos":"795","qlength":"29865","protein":"NSP2","variant":"F10L","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-CZB-1437/2020|EPI_ISL_468407|2020-03-26","refpos":"1059","refvar":"C","qvar":"T","qpos":"1021","qlength":"29865","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-CZB-1437/2020|EPI_ISL_468407|2020-03-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"2999","qlength":"29865","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-CZB-1437/2020|EPI_ISL_468407|2020-03-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14370","qlength":"29865","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-CZB-1437/2020|EPI_ISL_468407|2020-03-26","refpos":"28144","refvar":"T","qvar":"C","qpos":"28106","qlength":"29865","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/CA-CZB-1966/2020|EPI_ISL_486238|2020-05-06","refpos":"241","refvar":"C","qvar":"T","qpos":"211","qlength":"29873","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-CZB-1966/2020|EPI_ISL_486238|2020-05-06","refpos":"1059","refvar":"C","qvar":"T","qpos":"1029","qlength":"29873","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-CZB-1966/2020|EPI_ISL_486238|2020-05-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"3007","qlength":"29873","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-CZB-1966/2020|EPI_ISL_486238|2020-05-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14378","qlength":"29873","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-CZB-1966/2020|EPI_ISL_486238|2020-05-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23373","qlength":"29873","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-CZB-1966/2020|EPI_ISL_486238|2020-05-06","refpos":"25563","refvar":"G","qvar":"T","qpos":"25533","qlength":"29873","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/CA-CZB-1966/2020|EPI_ISL_486238|2020-05-06","refpos":"29384","refvar":"G","qvar":"T","qpos":"29354","qlength":"29873","protein":"N","variant":"D371Y","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"241","refvar":"C","qvar":"T","qpos":"237","qlength":"29899","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"823","refvar":"C","qvar":"T","qpos":"819","qlength":"29899","protein":"NSP2","variant":"V6V","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"1457","refvar":"C","qvar":"T","qpos":"1453","qlength":"29899","protein":"NSP2","variant":"R218C","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"3033","qlength":"29899","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"3304","refvar":"G","qvar":"T","qpos":"3300","qlength":"29899","protein":"NSP3","variant":"E195D","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14404","qlength":"29899","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"18898","refvar":"G","qvar":"T","qpos":"18894","qlength":"29899","protein":"NSP14","variant":"V287F","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"18907","refvar":"G","qvar":"T","qpos":"18903","qlength":"29899","protein":"NSP14","variant":"V290F","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"22208","refvar":"C","qvar":"T","qpos":"22204","qlength":"29899","protein":"S","variant":"L216F","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23399","qlength":"29899","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-CZB-1999/2020|EPI_ISL_486259|2020-04-30","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28877","qlength":"29899","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/CA-QDX-67/2020|EPI_ISL_467839|2020-03-13","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-QDX-67/2020|EPI_ISL_467839|2020-03-13","refpos":"652","refvar":"A","qvar":"G","qpos":"598","qlength":"29782","protein":"NSP1","variant":"K129K","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/CA-QDX-67/2020|EPI_ISL_467839|2020-03-13","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-QDX-67/2020|EPI_ISL_467839|2020-03-13","refpos":"1387","refvar":"C","qvar":"T","qpos":"1333","qlength":"29782","protein":"NSP2","variant":"H194H","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CA-QDX-67/2020|EPI_ISL_467839|2020-03-13","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-QDX-67/2020|EPI_ISL_467839|2020-03-13","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-QDX-67/2020|EPI_ISL_467839|2020-03-13","refpos":"20755","refvar":"A","qvar":"C","qpos":"20701","qlength":"29782","protein":"NSP16","variant":"S33R","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/USA/CA-QDX-67/2020|EPI_ISL_467839|2020-03-13","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-QDX-67/2020|EPI_ISL_467839|2020-03-13","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/CA-SR0355/2020|EPI_ISL_458240|2020-04-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CA-SR0355/2020|EPI_ISL_458240|2020-04-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CA-SR0355/2020|EPI_ISL_458240|2020-04-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CA-SR0355/2020|EPI_ISL_458240|2020-04-03","refpos":"18877","refvar":"C","qvar":"T","qpos":"18877","qlength":"29903","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/CA-SR0355/2020|EPI_ISL_458240|2020-04-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CA-SR0355/2020|EPI_ISL_458240|2020-04-03","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/CT-Yale-250/2020|EPI_ISL_469177|2020-04-01","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/CT-Yale-250/2020|EPI_ISL_469177|2020-04-01","refpos":"393","refvar":"G","qvar":"T","qpos":"339","qlength":"29782","protein":"NSP1","variant":"R43L","varclass":"SNP","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/CT-Yale-250/2020|EPI_ISL_469177|2020-04-01","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/CT-Yale-250/2020|EPI_ISL_469177|2020-04-01","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/CT-Yale-250/2020|EPI_ISL_469177|2020-04-01","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CT-Yale-250/2020|EPI_ISL_469177|2020-04-01","refpos":"14937","refvar":"C","qvar":"T","qpos":"14883","qlength":"29782","protein":"NSP12b","variant":"D490D","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/CT-Yale-250/2020|EPI_ISL_469177|2020-04-01","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/CT-Yale-250/2020|EPI_ISL_469177|2020-04-01","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/DC-HP00059/2020|EPI_ISL_457801|2020-03-24","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/DC-HP00059/2020|EPI_ISL_457801|2020-03-24","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/DC-HP00059/2020|EPI_ISL_457801|2020-03-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/DC-HP00059/2020|EPI_ISL_457801|2020-03-24","refpos":"4504","refvar":"G","qvar":"T","qpos":"4450","qlength":"29782","protein":"NSP3","variant":"E595D","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/DC-HP00059/2020|EPI_ISL_457801|2020-03-24","refpos":"5869","refvar":"C","qvar":"T","qpos":"5815","qlength":"29782","protein":"NSP3","variant":"Y1050Y","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/DC-HP00059/2020|EPI_ISL_457801|2020-03-24","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/DC-HP00059/2020|EPI_ISL_457801|2020-03-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/DC-HP00059/2020|EPI_ISL_457801|2020-03-24","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/DC-HP00059/2020|EPI_ISL_457801|2020-03-24","refpos":"27964","refvar":"C","qvar":"T","qpos":"27910","qlength":"29782","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/IL-UW-360/2020|EPI_ISL_450714|2020-04-18","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/IL-UW-360/2020|EPI_ISL_450714|2020-04-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/IL-UW-360/2020|EPI_ISL_450714|2020-04-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/IL-UW-360/2020|EPI_ISL_450714|2020-04-18","refpos":"15354","refvar":"T","qvar":"C","qpos":"15300","qlength":"29782","protein":"NSP12b","variant":"L629L","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/IL-UW-360/2020|EPI_ISL_450714|2020-04-18","refpos":"18877","refvar":"C","qvar":"T","qpos":"18823","qlength":"29782","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/IL-UW-360/2020|EPI_ISL_450714|2020-04-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/IL-UW-360/2020|EPI_ISL_450714|2020-04-18","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/IL-UW-360/2020|EPI_ISL_450714|2020-04-18","refpos":"28798","refvar":"G","qvar":"A","qpos":"28744","qlength":"29782","protein":"N","variant":"G175G","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/LA-BIE-003/2020|EPI_ISL_468703|2020-04-06","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/LA-BIE-003/2020|EPI_ISL_468703|2020-04-06","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/LA-BIE-003/2020|EPI_ISL_468703|2020-04-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/LA-BIE-003/2020|EPI_ISL_468703|2020-04-06","refpos":"10319","refvar":"C","qvar":"T","qpos":"10319","qlength":"29903","protein":"NSP5","variant":"L89F","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/LA-BIE-003/2020|EPI_ISL_468703|2020-04-06","refpos":"11083","refvar":"G","qvar":"T","qpos":"11083","qlength":"29903","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/LA-BIE-003/2020|EPI_ISL_468703|2020-04-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/LA-BIE-003/2020|EPI_ISL_468703|2020-04-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-BIE-003/2020|EPI_ISL_468703|2020-04-06","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/LA-BIE-003/2020|EPI_ISL_468703|2020-04-06","refpos":"27964","refvar":"C","qvar":"T","qpos":"27964","qlength":"29903","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/LA-EVTL038/2020|EPI_ISL_435576|2020-04-24","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29840","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/LA-EVTL038/2020|EPI_ISL_435576|2020-04-24","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29840","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/LA-EVTL038/2020|EPI_ISL_435576|2020-04-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29840","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/LA-EVTL038/2020|EPI_ISL_435576|2020-04-24","refpos":"12079","refvar":"G","qvar":"A","qpos":"12079","qlength":"29840","protein":"NSP7","variant":"R79R","varclass":"SNP_silent","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/USA/LA-EVTL038/2020|EPI_ISL_435576|2020-04-24","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29840","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/LA-EVTL038/2020|EPI_ISL_435576|2020-04-24","refpos":"21304","refvar":"CG","qvar":"AA","qpos":"21304","qlength":"29840","protein":"NSP16","variant":"R216N","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/USA/LA-EVTL038/2020|EPI_ISL_435576|2020-04-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29840","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-EVTL038/2020|EPI_ISL_435576|2020-04-24","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29840","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/LA-EVTL038/2020|EPI_ISL_435576|2020-04-24","refpos":"27964","refvar":"C","qvar":"T","qpos":"27964","qlength":"29840","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"10188","refvar":"C","qvar":"T","qpos":"10134","qlength":"29782","protein":"NSP5","variant":"T45I","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"24982","refvar":"T","qvar":"C","qpos":"24928","qlength":"29782","protein":"S","variant":"P1140P","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"26209","refvar":"G","qvar":"A","qpos":"26155","qlength":"29782","protein":"ORF3a","variant":"V273M","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/LA-GBCL-26492434/2020|EPI_ISL_485019|2020-04-28","refpos":"27964","refvar":"C","qvar":"T","qpos":"27910","qlength":"29782","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"1912","refvar":"C","qvar":"T","qpos":"1858","qlength":"29782","protein":"NSP2","variant":"S369S","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"10188","refvar":"C","qvar":"T","qpos":"10134","qlength":"29782","protein":"NSP5","variant":"T45I","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"16538","refvar":"A","qvar":"G","qpos":"16484","qlength":"29782","protein":"NSP13","variant":"D101G","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"24982","refvar":"T","qvar":"C","qpos":"24928","qlength":"29782","protein":"S","variant":"P1140P","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/LA-GBCL-26544587/2020|EPI_ISL_485156|2020-04-17","refpos":"27964","refvar":"C","qvar":"T","qpos":"27910","qlength":"29782","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/LA-GBCL-26684463/2020|EPI_ISL_485284|2020-04-04","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/LA-GBCL-26684463/2020|EPI_ISL_485284|2020-04-04","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/LA-GBCL-26684463/2020|EPI_ISL_485284|2020-04-04","refpos":"1980","refvar":"G","qvar":"A","qpos":"1926","qlength":"29782","protein":"NSP2","variant":"G392E","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/LA-GBCL-26684463/2020|EPI_ISL_485284|2020-04-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/LA-GBCL-26684463/2020|EPI_ISL_485284|2020-04-04","refpos":"9246","refvar":"C","qvar":"T","qpos":"9192","qlength":"29782","protein":"NSP4","variant":"A231V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/LA-GBCL-26684463/2020|EPI_ISL_485284|2020-04-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/LA-GBCL-26684463/2020|EPI_ISL_485284|2020-04-04","refpos":"22450","refvar":"C","qvar":"T","qpos":"22396","qlength":"29782","protein":"S","variant":"L296L","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-GBCL-26684463/2020|EPI_ISL_485284|2020-04-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/USA/LA-GBCL-26684463/2020|EPI_ISL_485284|2020-04-04","refpos":"27964","refvar":"C","qvar":"T","qpos":"27910","qlength":"29782","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/LA-SR0294/2020|EPI_ISL_445149|2020-04-08","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/LA-SR0294/2020|EPI_ISL_445149|2020-04-08","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/LA-SR0294/2020|EPI_ISL_445149|2020-04-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/LA-SR0294/2020|EPI_ISL_445149|2020-04-08","refpos":"10319","refvar":"C","qvar":"T","qpos":"10319","qlength":"29903","protein":"NSP5","variant":"L89F","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/LA-SR0294/2020|EPI_ISL_445149|2020-04-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/LA-SR0294/2020|EPI_ISL_445149|2020-04-08","refpos":"19903","refvar":"C","qvar":"G","qpos":"19903","qlength":"29903","protein":"NSP15","variant":"H95D","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/LA-SR0294/2020|EPI_ISL_445149|2020-04-08","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-SR0294/2020|EPI_ISL_445149|2020-04-08","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/LA-SR0294/2020|EPI_ISL_445149|2020-04-08","refpos":"27964","refvar":"C","qvar":"T","qpos":"27964","qlength":"29903","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29894","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"686","refvar":"AAGTCATTT","qvar":".","qpos":"685","qlength":"29894","protein":"NSP1","variant":"K141","varclass":"deletion","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"1059","refvar":"C","qvar":"T","qpos":"1050","qlength":"29894","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"3037","refvar":"C","qvar":"T","qpos":"3028","qlength":"29894","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"7765","refvar":"C","qvar":"T","qpos":"7756","qlength":"29894","protein":"NSP3","variant":"S1682S","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"10188","refvar":"C","qvar":"T","qpos":"10179","qlength":"29894","protein":"NSP5","variant":"T45I","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"14408","refvar":"C","qvar":"T","qpos":"14399","qlength":"29894","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"23403","refvar":"A","qvar":"G","qpos":"23394","qlength":"29894","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"24982","refvar":"T","qvar":"C","qpos":"24973","qlength":"29894","protein":"S","variant":"P1140P","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"25563","refvar":"G","qvar":"T","qpos":"25554","qlength":"29894","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/LA-SR0306/2020|EPI_ISL_445161|2020-04-07","refpos":"27964","refvar":"C","qvar":"T","qpos":"27955","qlength":"29894","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/MA-MGH-00048/2020|EPI_ISL_460291|2020-03-23","refpos":"241","refvar":"C","qvar":"T","qpos":"235","qlength":"29869","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MA-MGH-00048/2020|EPI_ISL_460291|2020-03-23","refpos":"313","refvar":"C","qvar":"T","qpos":"307","qlength":"29869","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/MA-MGH-00048/2020|EPI_ISL_460291|2020-03-23","refpos":"3037","refvar":"C","qvar":"T","qpos":"3031","qlength":"29869","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MA-MGH-00048/2020|EPI_ISL_460291|2020-03-23","refpos":"14408","refvar":"C","qvar":"T","qpos":"14402","qlength":"29869","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MA-MGH-00048/2020|EPI_ISL_460291|2020-03-23","refpos":"21058","refvar":"C","qvar":"T","qpos":"21052","qlength":"29869","protein":"NSP16","variant":"P134S","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/USA/MA-MGH-00048/2020|EPI_ISL_460291|2020-03-23","refpos":"23403","refvar":"A","qvar":"G","qpos":"23397","qlength":"29869","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/MA-MGH-00048/2020|EPI_ISL_460291|2020-03-23","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28875","qlength":"29869","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/MA-MGH-00659/2020|EPI_ISL_460217|2020-04-03","refpos":"241","refvar":"C","qvar":"T","qpos":"225","qlength":"29854","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MA-MGH-00659/2020|EPI_ISL_460217|2020-04-03","refpos":"2416","refvar":"C","qvar":"T","qpos":"2400","qlength":"29854","protein":"NSP2","variant":"Y537Y","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MA-MGH-00659/2020|EPI_ISL_460217|2020-04-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3021","qlength":"29854","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MA-MGH-00659/2020|EPI_ISL_460217|2020-04-03","refpos":"10216","refvar":"T","qvar":"C","qpos":"10200","qlength":"29854","protein":"NSP5","variant":"Y54Y","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/MA-MGH-00659/2020|EPI_ISL_460217|2020-04-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14392","qlength":"29854","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MA-MGH-00659/2020|EPI_ISL_460217|2020-04-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23387","qlength":"29854","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/MA-MGH-00659/2020|EPI_ISL_460217|2020-04-03","refpos":"25563","refvar":"G","qvar":"T","qpos":"25547","qlength":"29854","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/MA-MGH-00659/2020|EPI_ISL_460217|2020-04-03","refpos":"26233","refvar":"G","qvar":"T","qpos":"26217","qlength":"29854","protein":"intergenic","variant":"26233","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MA_3878/2020|EPI_ISL_424846|2020-03-06","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29882","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MA_3878/2020|EPI_ISL_424846|2020-03-06","refpos":"2416","refvar":"C","qvar":"T","qpos":"2416","qlength":"29882","protein":"NSP2","variant":"Y537Y","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MA_3878/2020|EPI_ISL_424846|2020-03-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29882","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MA_3878/2020|EPI_ISL_424846|2020-03-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29882","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MA_3878/2020|EPI_ISL_424846|2020-03-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29882","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/MA_3878/2020|EPI_ISL_424846|2020-03-06","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29882","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/MD-HP00017/2020|EPI_ISL_457790|2020-03-20","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MD-HP00017/2020|EPI_ISL_457790|2020-03-20","refpos":"833","refvar":"T","qvar":"C","qpos":"833","qlength":"29903","protein":"NSP2","variant":"F10L","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MD-HP00017/2020|EPI_ISL_457790|2020-03-20","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MD-HP00017/2020|EPI_ISL_457790|2020-03-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MD-HP00017/2020|EPI_ISL_457790|2020-03-20","refpos":"13660","refvar":"A","qvar":"C","qpos":"13660","qlength":"29903","protein":"NSP12b","variant":"K64K","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MD-HP00017/2020|EPI_ISL_457790|2020-03-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MD-HP00017/2020|EPI_ISL_457790|2020-03-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/MD-HP00017/2020|EPI_ISL_457790|2020-03-20","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/MD-HP00017/2020|EPI_ISL_457790|2020-03-20","refpos":"27964","refvar":"C","qvar":"T","qpos":"27964","qlength":"29903","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/MD-HP00131/2020|EPI_ISL_457819|2020-03-18","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MD-HP00131/2020|EPI_ISL_457819|2020-03-18","refpos":"2416","refvar":"C","qvar":"T","qpos":"2416","qlength":"29903","protein":"NSP2","variant":"Y537Y","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MD-HP00131/2020|EPI_ISL_457819|2020-03-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MD-HP00131/2020|EPI_ISL_457819|2020-03-18","refpos":"9430","refvar":"C","qvar":"T","qpos":"9430","qlength":"29903","protein":"NSP4","variant":"I292I","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/MD-HP00131/2020|EPI_ISL_457819|2020-03-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MD-HP00131/2020|EPI_ISL_457819|2020-03-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/MD-HP00131/2020|EPI_ISL_457819|2020-03-18","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/MD-HP00131/2020|EPI_ISL_457819|2020-03-18","refpos":"26233","refvar":"G","qvar":"T","qpos":"26233","qlength":"29903","protein":"intergenic","variant":"26233","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MD_NIDDL_2981/2020|EPI_ISL_491908|2020-04-07","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MD_NIDDL_2981/2020|EPI_ISL_491908|2020-04-07","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MD_NIDDL_2981/2020|EPI_ISL_491908|2020-04-07","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MD_NIDDL_2981/2020|EPI_ISL_491908|2020-04-07","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MD_NIDDL_2981/2020|EPI_ISL_491908|2020-04-07","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/MD_NIDDL_2981/2020|EPI_ISL_491908|2020-04-07","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"241","refvar":"C","qvar":"T","qpos":"203","qlength":"29818","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"518","refvar":"ATG","qvar":".","qpos":"479","qlength":"29818","protein":"NSP1","variant":"M85","varclass":"deletion","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"1059","refvar":"C","qvar":"T","qpos":"1018","qlength":"29818","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"2939","refvar":"C","qvar":"T","qpos":"2898","qlength":"29818","protein":"NSP3","variant":"P74S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"3037","refvar":"C","qvar":"T","qpos":"2996","qlength":"29818","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"14408","refvar":"C","qvar":"T","qpos":"14367","qlength":"29818","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"23403","refvar":"A","qvar":"G","qpos":"23362","qlength":"29818","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"25437","refvar":"G","qvar":"T","qpos":"25396","qlength":"29818","protein":"ORF3a","variant":"L15F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"25563","refvar":"G","qvar":"T","qpos":"25522","qlength":"29818","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/MN-MDH-1137/2020|EPI_ISL_476722|2020-04-28","refpos":"27821","refvar":"A","qvar":"G","qpos":"27780","qlength":"29818","protein":"ORF7b","variant":"L22L","varclass":"SNP_silent","annotation":"ORF7b protein"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"241","refvar":"C","qvar":"T","qpos":"225","qlength":"29845","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"1059","refvar":"C","qvar":"T","qpos":"1043","qlength":"29845","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"1812","refvar":"C","qvar":"T","qpos":"1796","qlength":"29845","protein":"NSP2","variant":"A336V","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"3021","qlength":"29845","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"6026","refvar":"C","qvar":"T","qpos":"6010","qlength":"29845","protein":"NSP3","variant":"P1103S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"10319","refvar":"C","qvar":"T","qpos":"10303","qlength":"29845","protein":"NSP5","variant":"L89F","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"13665","refvar":"C","qvar":"T","qpos":"13649","qlength":"29845","protein":"NSP12b","variant":"H66H","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14392","qlength":"29845","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"23403","refvar":"A","qvar":"G","qpos":"23387","qlength":"29845","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"25563","refvar":"G","qvar":"T","qpos":"25547","qlength":"29845","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"27964","refvar":"C","qvar":"T","qpos":"27948","qlength":"29845","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/MN-MDH-1225/2020|EPI_ISL_482946|2020-05-08","refpos":"28531","refvar":"C","qvar":"T","qpos":"28515","qlength":"29845","protein":"N","variant":"Y86Y","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/MN-MDH-97/2020|EPI_ISL_460077|2020-03-16","refpos":"241","refvar":"C","qvar":"T","qpos":"239","qlength":"29849","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/MN-MDH-97/2020|EPI_ISL_460077|2020-03-16","refpos":"1059","refvar":"C","qvar":"T","qpos":"1057","qlength":"29849","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/MN-MDH-97/2020|EPI_ISL_460077|2020-03-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3035","qlength":"29849","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MN-MDH-97/2020|EPI_ISL_460077|2020-03-16","refpos":"4138","refvar":"T","qvar":"C","qpos":"4136","qlength":"29849","protein":"NSP3","variant":"V473V","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/MN-MDH-97/2020|EPI_ISL_460077|2020-03-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14406","qlength":"29849","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MN-MDH-97/2020|EPI_ISL_460077|2020-03-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23401","qlength":"29849","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/MN-MDH-97/2020|EPI_ISL_460077|2020-03-16","refpos":"25563","refvar":"G","qvar":"T","qpos":"25561","qlength":"29849","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"833","refvar":"T","qvar":"C","qpos":"779","qlength":"29782","protein":"NSP2","variant":"F10L","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"11752","refvar":"C","qvar":"T","qpos":"11698","qlength":"29782","protein":"NSP6","variant":"L260L","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"11962","refvar":"C","qvar":"T","qpos":"11908","qlength":"29782","protein":"NSP7","variant":"L40L","varclass":"SNP_silent","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/NC-QDX-180/2020|EPI_ISL_494527|2020-04-28","refpos":"27964","refvar":"C","qvar":"T","qpos":"27910","qlength":"29782","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"10851","refvar":"C","qvar":"T","qpos":"10797","qlength":"29782","protein":"NSP5","variant":"A266V","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"22320","refvar":"A","qvar":"G","qpos":"22266","qlength":"29782","protein":"S","variant":"D253G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"28789","refvar":"C","qvar":"T","qpos":"28735","qlength":"29782","protein":"N","variant":"Y172Y","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/NY-AECOM-036/2020|EPI_ISL_467945|2020-04-21","refpos":"28887","refvar":"C","qvar":"T","qpos":"28833","qlength":"29782","protein":"N","variant":"T205I","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"2635","refvar":"G","qvar":"A","qpos":"2635","qlength":"29903","protein":"NSP2","variant":"L610L","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"10341","refvar":"C","qvar":"T","qpos":"10341","qlength":"29903","protein":"NSP5","variant":"P96L","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"11916","refvar":"C","qvar":"T","qpos":"11916","qlength":"29903","protein":"NSP7","variant":"S25L","varclass":"SNP","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"18998","refvar":"C","qvar":"T","qpos":"18998","qlength":"29903","protein":"NSP14","variant":"A320V","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"19884","refvar":"C","qvar":"T","qpos":"19884","qlength":"29903","protein":"NSP15","variant":"Y88Y","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"22441","refvar":"T","qvar":"C","qpos":"22441","qlength":"29903","protein":"S","variant":"L293L","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01","refpos":"29540","refvar":"G","qvar":"A","qpos":"29540","qlength":"29903","protein":"intergenic","variant":"29540","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"1906","refvar":"T","qvar":"C","qpos":"1906","qlength":"29903","protein":"NSP2","variant":"I367I","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"2018","refvar":"A","qvar":"G","qpos":"2018","qlength":"29903","protein":"NSP2","variant":"M405V","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"7279","refvar":"C","qvar":"T","qpos":"7279","qlength":"29903","protein":"NSP3","variant":"F1520F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"12084","refvar":"C","qvar":"T","qpos":"12084","qlength":"29903","protein":"NSP7","variant":"T81I","varclass":"SNP","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"21995","refvar":"T","qvar":"C","qpos":"21995","qlength":"29903","protein":"S","variant":"Y145H","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-NYUMC526/2020|EPI_ISL_444643|2020-03-29","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/NY-NYUMC643/2020|EPI_ISL_444760|2020-04-03","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-NYUMC643/2020|EPI_ISL_444760|2020-04-03","refpos":"2003","refvar":"C","qvar":"T","qpos":"2003","qlength":"29903","protein":"NSP2","variant":"L400F","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-NYUMC643/2020|EPI_ISL_444760|2020-04-03","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NY-NYUMC643/2020|EPI_ISL_444760|2020-04-03","refpos":"5730","refvar":"C","qvar":"T","qpos":"5730","qlength":"29903","protein":"NSP3","variant":"T1004I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NY-NYUMC643/2020|EPI_ISL_444760|2020-04-03","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/NY-NYUMC643/2020|EPI_ISL_444760|2020-04-03","refpos":"21606","refvar":"G","qvar":"T","qpos":"21606","qlength":"29903","protein":"S","variant":"C15F","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-NYUMC643/2020|EPI_ISL_444760|2020-04-03","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-NYUMC643/2020|EPI_ISL_444760|2020-04-03","refpos":"28882","refvar":"GG","qvar":"AC","qpos":"28882","qlength":"29903","protein":"N","variant":"G204R","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/NY-NYUMC643/2020|EPI_ISL_444760|2020-04-03","refpos":"29868","refvar":"G","qvar":"A","qpos":"29868","qlength":"29903","protein":"3'UTR","variant":"29868","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-PV09169/2020|EPI_ISL_422531|2020-03-19","refpos":"241","refvar":"C","qvar":"T","qpos":"186","qlength":"29723","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-PV09169/2020|EPI_ISL_422531|2020-03-19","refpos":"1059","refvar":"C","qvar":"T","qpos":"1004","qlength":"29723","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-PV09169/2020|EPI_ISL_422531|2020-03-19","refpos":"3037","refvar":"C","qvar":"T","qpos":"2982","qlength":"29723","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NY-PV09169/2020|EPI_ISL_422531|2020-03-19","refpos":"11916","refvar":"C","qvar":"T","qpos":"11861","qlength":"29723","protein":"NSP7","variant":"S25L","varclass":"SNP","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/USA/NY-PV09169/2020|EPI_ISL_422531|2020-03-19","refpos":"14408","refvar":"C","qvar":"T","qpos":"14353","qlength":"29723","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/NY-PV09169/2020|EPI_ISL_422531|2020-03-19","refpos":"23403","refvar":"A","qvar":"G","qpos":"23348","qlength":"29723","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-PV09169/2020|EPI_ISL_422531|2020-03-19","refpos":"25563","refvar":"G","qvar":"T","qpos":"25508","qlength":"29723","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/NY-Wadsworth-11291-01/2020|EPI_ISL_426044|2020-03-06","refpos":"241","refvar":"C","qvar":"T","qpos":"216","qlength":"29822","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/NY-Wadsworth-11291-01/2020|EPI_ISL_426044|2020-03-06","refpos":"1059","refvar":"C","qvar":"T","qpos":"1034","qlength":"29822","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/NY-Wadsworth-11291-01/2020|EPI_ISL_426044|2020-03-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"3012","qlength":"29822","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/NY-Wadsworth-11291-01/2020|EPI_ISL_426044|2020-03-06","refpos":"8882","refvar":"A","qvar":"G","qpos":"8857","qlength":"29822","protein":"NSP4","variant":"I110V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/NY-Wadsworth-11291-01/2020|EPI_ISL_426044|2020-03-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14383","qlength":"29822","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/NY-Wadsworth-11291-01/2020|EPI_ISL_426044|2020-03-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23378","qlength":"29822","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/NY-Wadsworth-11291-01/2020|EPI_ISL_426044|2020-03-06","refpos":"25563","refvar":"G","qvar":"T","qpos":"25538","qlength":"29822","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/OR-PROV-180/2020|EPI_ISL_482429|2020-05-13","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/OR-PROV-180/2020|EPI_ISL_482429|2020-05-13","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29903","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/OR-PROV-180/2020|EPI_ISL_482429|2020-05-13","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/OR-PROV-180/2020|EPI_ISL_482429|2020-05-13","refpos":"7037","refvar":"G","qvar":"A","qpos":"7037","qlength":"29903","protein":"NSP3","variant":"G1440S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/OR-PROV-180/2020|EPI_ISL_482429|2020-05-13","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/OR-PROV-180/2020|EPI_ISL_482429|2020-05-13","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/OR-PROV-180/2020|EPI_ISL_482429|2020-05-13","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29903","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/OR-PROV-180/2020|EPI_ISL_482429|2020-05-13","refpos":"26110","refvar":"C","qvar":"T","qpos":"26110","qlength":"29903","protein":"ORF3a","variant":"P240S","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/OR-PROV-180/2020|EPI_ISL_482429|2020-05-13","refpos":"29700","refvar":"A","qvar":"G","qpos":"29700","qlength":"29903","protein":"3'UTR","variant":"29700","varclass":"extragenic"}
{"sample":"hCoV-19/USA/TX-HMH0193/2020|EPI_ISL_434868|2020-03-23","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/TX-HMH0193/2020|EPI_ISL_434868|2020-03-23","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/TX-HMH0193/2020|EPI_ISL_434868|2020-03-23","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/TX-HMH0193/2020|EPI_ISL_434868|2020-03-23","refpos":"15243","refvar":"G","qvar":"T","qpos":"15243","qlength":"29903","protein":"NSP12b","variant":"M592I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/TX-HMH0193/2020|EPI_ISL_434868|2020-03-23","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/UNKNOWN-UW-1671/2020|EPI_ISL_477683|2020-03-19","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29872","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/UNKNOWN-UW-1671/2020|EPI_ISL_477683|2020-03-19","refpos":"1059","refvar":"C","qvar":"T","qpos":"1059","qlength":"29872","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/UNKNOWN-UW-1671/2020|EPI_ISL_477683|2020-03-19","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29872","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/UNKNOWN-UW-1671/2020|EPI_ISL_477683|2020-03-19","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29872","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/UNKNOWN-UW-1671/2020|EPI_ISL_477683|2020-03-19","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29872","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/UNKNOWN-UW-1671/2020|EPI_ISL_477683|2020-03-19","refpos":"25563","refvar":"G","qvar":"T","qpos":"25563","qlength":"29872","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"241","refvar":"C","qvar":"T","qpos":"203","qlength":"29865","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"274","refvar":"C","qvar":"A","qpos":"236","qlength":"29865","protein":"NSP1","variant":"S3R","varclass":"SNP","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"2416","refvar":"C","qvar":"T","qpos":"2378","qlength":"29865","protein":"NSP2","variant":"Y537Y","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"3037","refvar":"C","qvar":"T","qpos":"2999","qlength":"29865","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"4523","refvar":"G","qvar":"A","qpos":"4485","qlength":"29865","protein":"NSP3","variant":"A602T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"10712","refvar":"C","qvar":"T","qpos":"10674","qlength":"29865","protein":"NSP5","variant":"L220F","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"14408","refvar":"C","qvar":"T","qpos":"14370","qlength":"29865","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"23403","refvar":"A","qvar":"G","qpos":"23365","qlength":"29865","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"25563","refvar":"G","qvar":"T","qpos":"25525","qlength":"29865","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/VA-DCLS-0089/2020|EPI_ISL_429986|2020-04-02","refpos":"29409","refvar":"C","qvar":"T","qpos":"29371","qlength":"29865","protein":"N","variant":"T379I","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/VA-DCLS-0137/2020|EPI_ISL_437776|2020-04-16","refpos":"241","refvar":"C","qvar":"T","qpos":"225","qlength":"29887","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/VA-DCLS-0137/2020|EPI_ISL_437776|2020-04-16","refpos":"1392","refvar":"C","qvar":"T","qpos":"1376","qlength":"29887","protein":"NSP2","variant":"S196L","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/VA-DCLS-0137/2020|EPI_ISL_437776|2020-04-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3021","qlength":"29887","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/VA-DCLS-0137/2020|EPI_ISL_437776|2020-04-16","refpos":"3874","refvar":"C","qvar":"T","qpos":"3858","qlength":"29887","protein":"NSP3","variant":"I385I","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/VA-DCLS-0137/2020|EPI_ISL_437776|2020-04-16","refpos":"10296","refvar":"C","qvar":"T","qpos":"10280","qlength":"29887","protein":"NSP5","variant":"S81F","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/VA-DCLS-0137/2020|EPI_ISL_437776|2020-04-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14392","qlength":"29887","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/VA-DCLS-0137/2020|EPI_ISL_437776|2020-04-16","refpos":"15324","refvar":"C","qvar":"T","qpos":"15308","qlength":"29887","protein":"NSP12b","variant":"N619N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/VA-DCLS-0137/2020|EPI_ISL_437776|2020-04-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23387","qlength":"29887","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/VA-DCLS-0137/2020|EPI_ISL_437776|2020-04-16","refpos":"29870","refvar":"C","qvar":"A","qpos":"29854","qlength":"29887","protein":"3'UTR","variant":"29870","varclass":"extragenic"}
{"sample":"hCoV-19/USA/VA-DCLS-0373/2020|EPI_ISL_463129|2020-05-08","refpos":"241","refvar":"C","qvar":"T","qpos":"237","qlength":"29899","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/VA-DCLS-0373/2020|EPI_ISL_463129|2020-05-08","refpos":"3037","refvar":"C","qvar":"T","qpos":"3033","qlength":"29899","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/VA-DCLS-0373/2020|EPI_ISL_463129|2020-05-08","refpos":"14408","refvar":"C","qvar":"T","qpos":"14404","qlength":"29899","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/VA-DCLS-0373/2020|EPI_ISL_463129|2020-05-08","refpos":"23403","refvar":"A","qvar":"G","qpos":"23399","qlength":"29899","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/VA-DCLS-0373/2020|EPI_ISL_463129|2020-05-08","refpos":"25708","refvar":"C","qvar":"T","qpos":"25704","qlength":"29899","protein":"ORF3a","variant":"L106F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/VA-DCLS-0373/2020|EPI_ISL_463129|2020-05-08","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28877","qlength":"29899","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/VA-DCLS-0404/2020|EPI_ISL_467799|2020-04-22","refpos":"241","refvar":"C","qvar":"T","qpos":"237","qlength":"29878","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/VA-DCLS-0404/2020|EPI_ISL_467799|2020-04-22","refpos":"1059","refvar":"C","qvar":"T","qpos":"1055","qlength":"29878","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/VA-DCLS-0404/2020|EPI_ISL_467799|2020-04-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3033","qlength":"29878","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/VA-DCLS-0404/2020|EPI_ISL_467799|2020-04-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14404","qlength":"29878","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/VA-DCLS-0404/2020|EPI_ISL_467799|2020-04-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23399","qlength":"29878","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/VA-DCLS-0404/2020|EPI_ISL_467799|2020-04-22","refpos":"25563","refvar":"G","qvar":"T","qpos":"25559","qlength":"29878","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S1050/2020|EPI_ISL_463540|2020-04-30","refpos":"241","refvar":"C","qvar":"T","qpos":"239","qlength":"29868","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S1050/2020|EPI_ISL_463540|2020-04-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"3035","qlength":"29868","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S1050/2020|EPI_ISL_463540|2020-04-30","refpos":"5538","refvar":"A","qvar":"T","qpos":"5536","qlength":"29868","protein":"NSP3","variant":"Q940L","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S1050/2020|EPI_ISL_463540|2020-04-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14406","qlength":"29868","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1050/2020|EPI_ISL_463540|2020-04-30","refpos":"16813","refvar":"G","qvar":"A","qpos":"16811","qlength":"29868","protein":"NSP13","variant":"V193I","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S1050/2020|EPI_ISL_463540|2020-04-30","refpos":"18511","refvar":"C","qvar":"T","qpos":"18509","qlength":"29868","protein":"NSP14","variant":"P158S","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WA-S1050/2020|EPI_ISL_463540|2020-04-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23401","qlength":"29868","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S1050/2020|EPI_ISL_463540|2020-04-30","refpos":"25783","refvar":"T","qvar":"C","qpos":"25781","qlength":"29868","protein":"ORF3a","variant":"W131R","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S1050/2020|EPI_ISL_463540|2020-04-30","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28879","qlength":"29868","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"241","refvar":"C","qvar":"T","qpos":"205","qlength":"29828","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"3037","refvar":"C","qvar":"T","qpos":"3001","qlength":"29828","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"14408","refvar":"C","qvar":"T","qpos":"14372","qlength":"29828","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"15933","refvar":"C","qvar":"T","qpos":"15897","qlength":"29828","protein":"NSP12b","variant":"Y822Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"17267","refvar":"A","qvar":"G","qpos":"17231","qlength":"29828","protein":"NSP13","variant":"D344G","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"19839","refvar":"T","qvar":"C","qpos":"19803","qlength":"29828","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"22352","refvar":"G","qvar":"T","qpos":"22316","qlength":"29828","protein":"S","variant":"A264S","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"23403","refvar":"A","qvar":"G","qpos":"23367","qlength":"29828","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28845","qlength":"29828","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S1264/2020|EPI_ISL_495714|2020-05-13","refpos":"29784","refvar":"C","qvar":"T","qpos":"29748","qlength":"29828","protein":"3'UTR","variant":"29784","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S1267/2020|EPI_ISL_495717|2020-05-07","refpos":"241","refvar":"C","qvar":"T","qpos":"228","qlength":"29857","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S1267/2020|EPI_ISL_495717|2020-05-07","refpos":"3037","refvar":"C","qvar":"T","qpos":"3024","qlength":"29857","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S1267/2020|EPI_ISL_495717|2020-05-07","refpos":"4197","refvar":"A","qvar":"G","qpos":"4184","qlength":"29857","protein":"NSP3","variant":"E493G","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S1267/2020|EPI_ISL_495717|2020-05-07","refpos":"14408","refvar":"C","qvar":"T","qpos":"14395","qlength":"29857","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1267/2020|EPI_ISL_495717|2020-05-07","refpos":"16813","refvar":"G","qvar":"A","qpos":"16800","qlength":"29857","protein":"NSP13","variant":"V193I","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S1267/2020|EPI_ISL_495717|2020-05-07","refpos":"23403","refvar":"A","qvar":"G","qpos":"23390","qlength":"29857","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S1267/2020|EPI_ISL_495717|2020-05-07","refpos":"25783","refvar":"T","qvar":"C","qpos":"25770","qlength":"29857","protein":"ORF3a","variant":"W131R","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S1267/2020|EPI_ISL_495717|2020-05-07","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28868","qlength":"29857","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"241","refvar":"C","qvar":"T","qpos":"226","qlength":"29855","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"379","refvar":"C","qvar":"A","qpos":"364","qlength":"29855","protein":"NSP1","variant":"V38V","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"1059","refvar":"C","qvar":"T","qpos":"1044","qlength":"29855","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"3022","qlength":"29855","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"6036","refvar":"G","qvar":"A","qpos":"6021","qlength":"29855","protein":"NSP3","variant":"S1106N","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"11208","refvar":"C","qvar":"T","qpos":"11193","qlength":"29855","protein":"NSP6","variant":"A79V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"14008","refvar":"G","qvar":"T","qpos":"13993","qlength":"29855","protein":"NSP12b","variant":"V181L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14393","qlength":"29855","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23388","qlength":"29855","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"24719","refvar":"C","qvar":"A","qpos":"24704","qlength":"29855","protein":"S","variant":"P1053T","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"25456","refvar":"G","qvar":"T","qpos":"25441","qlength":"29855","protein":"ORF3a","variant":"D22Y","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"25563","refvar":"G","qvar":"T","qpos":"25548","qlength":"29855","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"26333","refvar":"C","qvar":"T","qpos":"26318","qlength":"29855","protein":"E","variant":"T30I","varclass":"SNP","annotation":"Envelope"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"26753","refvar":"C","qvar":"A","qpos":"26738","qlength":"29855","protein":"M","variant":"T77T","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"27593","refvar":"G","qvar":"A","qpos":"27578","qlength":"29855","protein":"ORF7a","variant":"C67Y","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/USA/WA-S1551/2020|EPI_ISL_495977|2020-05-26","refpos":"28791","refvar":"C","qvar":"T","qpos":"28776","qlength":"29855","protein":"N","variant":"A173V","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"241","refvar":"C","qvar":"T","qpos":"230","qlength":"29859","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"3026","qlength":"29859","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14397","qlength":"29859","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"15933","refvar":"C","qvar":"T","qpos":"15922","qlength":"29859","protein":"NSP12b","variant":"Y822Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"16968","refvar":"G","qvar":"T","qpos":"16957","qlength":"29859","protein":"NSP13","variant":"E244D","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"18747","refvar":"C","qvar":"T","qpos":"18736","qlength":"29859","protein":"NSP14","variant":"V236V","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"19839","refvar":"T","qvar":"C","qpos":"19828","qlength":"29859","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23392","qlength":"29859","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28870","qlength":"29859","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S1595/2020|EPI_ISL_496021|2020-05-26","refpos":"29784","refvar":"C","qvar":"T","qpos":"29773","qlength":"29859","protein":"3'UTR","variant":"29784","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S1650/2020|EPI_ISL_496076|2020-05-29","refpos":"241","refvar":"C","qvar":"T","qpos":"229","qlength":"29858","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S1650/2020|EPI_ISL_496076|2020-05-29","refpos":"3037","refvar":"C","qvar":"T","qpos":"3025","qlength":"29858","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S1650/2020|EPI_ISL_496076|2020-05-29","refpos":"14408","refvar":"C","qvar":"T","qpos":"14396","qlength":"29858","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1650/2020|EPI_ISL_496076|2020-05-29","refpos":"15933","refvar":"C","qvar":"T","qpos":"15921","qlength":"29858","protein":"NSP12b","variant":"Y822Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S1650/2020|EPI_ISL_496076|2020-05-29","refpos":"19839","refvar":"T","qvar":"C","qpos":"19827","qlength":"29858","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WA-S1650/2020|EPI_ISL_496076|2020-05-29","refpos":"23403","refvar":"A","qvar":"G","qpos":"23391","qlength":"29858","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S1650/2020|EPI_ISL_496076|2020-05-29","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28869","qlength":"29858","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S1650/2020|EPI_ISL_496076|2020-05-29","refpos":"29784","refvar":"C","qvar":"T","qpos":"29772","qlength":"29858","protein":"3'UTR","variant":"29784","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"241","refvar":"C","qvar":"T","qpos":"218","qlength":"29847","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"1348","refvar":"C","qvar":"T","qpos":"1325","qlength":"29847","protein":"NSP2","variant":"P181P","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"3037","refvar":"C","qvar":"T","qpos":"3014","qlength":"29847","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"14408","refvar":"C","qvar":"T","qpos":"14385","qlength":"29847","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"15933","refvar":"C","qvar":"T","qpos":"15910","qlength":"29847","protein":"NSP12b","variant":"Y822Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"16968","refvar":"G","qvar":"T","qpos":"16945","qlength":"29847","protein":"NSP13","variant":"E244D","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"19839","refvar":"T","qvar":"C","qpos":"19816","qlength":"29847","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"22203","refvar":"G","qvar":"T","qpos":"22180","qlength":"29847","protein":"S","variant":"R214L","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"23403","refvar":"A","qvar":"G","qpos":"23380","qlength":"29847","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"23422","refvar":"C","qvar":"T","qpos":"23399","qlength":"29847","protein":"S","variant":"V620V","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28858","qlength":"29847","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S2309/2020|EPI_ISL_496941|2020-06-11","refpos":"29784","refvar":"C","qvar":"T","qpos":"29761","qlength":"29847","protein":"3'UTR","variant":"29784","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"241","refvar":"C","qvar":"T","qpos":"227","qlength":"29856","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"3037","refvar":"C","qvar":"T","qpos":"3023","qlength":"29856","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"10292","refvar":"C","qvar":"A","qpos":"10278","qlength":"29856","protein":"NSP5","variant":"H80N","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"14408","refvar":"C","qvar":"T","qpos":"14394","qlength":"29856","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"14768","refvar":"C","qvar":"T","qpos":"14754","qlength":"29856","protein":"NSP12b","variant":"A434V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"15933","refvar":"C","qvar":"T","qpos":"15919","qlength":"29856","protein":"NSP12b","variant":"Y822Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"16968","refvar":"G","qvar":"T","qpos":"16954","qlength":"29856","protein":"NSP13","variant":"E244D","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"19839","refvar":"T","qvar":"C","qpos":"19825","qlength":"29856","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"22591","refvar":"C","qvar":"T","qpos":"22577","qlength":"29856","protein":"S","variant":"N343N","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"23403","refvar":"A","qvar":"G","qpos":"23389","qlength":"29856","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"28193","refvar":"G","qvar":"T","qpos":"28179","qlength":"29856","protein":"ORF8","variant":"V100V","varclass":"SNP_silent","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28867","qlength":"29856","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S2477/2020|EPI_ISL_497109|2020-06-15","refpos":"29784","refvar":"C","qvar":"T","qpos":"29770","qlength":"29856","protein":"3'UTR","variant":"29784","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"241","refvar":"C","qvar":"T","qpos":"239","qlength":"29868","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"833","refvar":"T","qvar":"C","qpos":"831","qlength":"29868","protein":"NSP2","variant":"F10L","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"1059","refvar":"C","qvar":"T","qpos":"1057","qlength":"29868","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3035","qlength":"29868","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"6548","refvar":"C","qvar":"T","qpos":"6546","qlength":"29868","protein":"NSP3","variant":"D1276D","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"7860","refvar":"C","qvar":"T","qpos":"7858","qlength":"29868","protein":"NSP3","variant":"T1714I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14406","qlength":"29868","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"17108","refvar":"T","qvar":"A","qpos":"17106","qlength":"29868","protein":"NSP13","variant":"F291Y","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"20033","refvar":"G","qvar":"T","qpos":"20031","qlength":"29868","protein":"NSP15","variant":"R138L","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"21985","refvar":"G","qvar":"T","qpos":"21983","qlength":"29868","protein":"S","variant":"L141F","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"22592","refvar":"G","qvar":"T","qpos":"22590","qlength":"29868","protein":"S","variant":"A344S","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23401","qlength":"29868","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"25537","refvar":"G","qvar":"A","qpos":"25535","qlength":"29868","protein":"ORF3a","variant":"G49S","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"25563","refvar":"G","qvar":"T","qpos":"25561","qlength":"29868","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"26822","refvar":"C","qvar":"T","qpos":"26820","qlength":"29868","protein":"M","variant":"F100F","varclass":"SNP_silent","annotation":"Membrane"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"27964","refvar":"C","qvar":"T","qpos":"27962","qlength":"29868","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/WA-S2530/2020|EPI_ISL_497162|2020-06-16","refpos":"29527","refvar":"G","qvar":"A","qpos":"29525","qlength":"29868","protein":"N","variant":"Q418Q","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"241","refvar":"C","qvar":"T","qpos":"239","qlength":"29872","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3035","qlength":"29872","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"3452","refvar":"G","qvar":"A","qpos":"3450","qlength":"29872","protein":"NSP3","variant":"V245I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"3992","refvar":"C","qvar":"T","qpos":"3990","qlength":"29872","protein":"NSP3","variant":"T424T","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"4510","refvar":"G","qvar":"T","qpos":"4508","qlength":"29872","protein":"NSP3","variant":"V597V","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"8311","refvar":"C","qvar":"T","qpos":"8309","qlength":"29872","protein":"NSP3","variant":"N1864N","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14406","qlength":"29872","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"15933","refvar":"C","qvar":"T","qpos":"15931","qlength":"29872","protein":"NSP12b","variant":"Y822Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"19839","refvar":"T","qvar":"C","qpos":"19837","qlength":"29872","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23401","qlength":"29872","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"25451","refvar":"T","qvar":"C","qpos":"25449","qlength":"29872","protein":"ORF3a","variant":"I20T","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28879","qlength":"29872","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S2690/2020|EPI_ISL_497322|2020-06-22","refpos":"29784","refvar":"C","qvar":"T","qpos":"29782","qlength":"29872","protein":"3'UTR","variant":"29784","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S532/2020|EPI_ISL_434292|2020-03-25","refpos":"241","refvar":"C","qvar":"T","qpos":"239","qlength":"29868","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S532/2020|EPI_ISL_434292|2020-03-25","refpos":"1059","refvar":"C","qvar":"T","qpos":"1057","qlength":"29868","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-S532/2020|EPI_ISL_434292|2020-03-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"3035","qlength":"29868","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S532/2020|EPI_ISL_434292|2020-03-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14406","qlength":"29868","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S532/2020|EPI_ISL_434292|2020-03-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23401","qlength":"29868","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S532/2020|EPI_ISL_434292|2020-03-25","refpos":"25563","refvar":"G","qvar":"T","qpos":"25561","qlength":"29868","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"241","refvar":"C","qvar":"T","qpos":"240","qlength":"29869","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"833","refvar":"T","qvar":"C","qpos":"832","qlength":"29869","protein":"NSP2","variant":"F10L","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"1059","refvar":"C","qvar":"T","qpos":"1058","qlength":"29869","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"3036","qlength":"29869","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14407","qlength":"29869","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"17163","refvar":"C","qvar":"T","qpos":"17162","qlength":"29869","protein":"NSP13","variant":"C309C","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"23248","refvar":"C","qvar":"T","qpos":"23247","qlength":"29869","protein":"S","variant":"F562F","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23402","qlength":"29869","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"25563","refvar":"G","qvar":"T","qpos":"25562","qlength":"29869","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S651/2020|EPI_ISL_438204|2020-04-20","refpos":"27964","refvar":"C","qvar":"T","qpos":"27963","qlength":"29869","protein":"ORF8","variant":"S24L","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/USA/WA-S830/2020|EPI_ISL_450000|2020-04-16","refpos":"241","refvar":"C","qvar":"T","qpos":"238","qlength":"29867","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S830/2020|EPI_ISL_450000|2020-04-16","refpos":"1059","refvar":"C","qvar":"T","qpos":"1056","qlength":"29867","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-S830/2020|EPI_ISL_450000|2020-04-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3034","qlength":"29867","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S830/2020|EPI_ISL_450000|2020-04-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14405","qlength":"29867","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-S830/2020|EPI_ISL_450000|2020-04-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23400","qlength":"29867","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S830/2020|EPI_ISL_450000|2020-04-16","refpos":"25563","refvar":"G","qvar":"T","qpos":"25560","qlength":"29867","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-S830/2020|EPI_ISL_450000|2020-04-16","refpos":"29553","refvar":"G","qvar":"A","qpos":"29550","qlength":"29867","protein":"intergenic","variant":"29553","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-1779/2020|EPI_ISL_424260|2020-03-22","refpos":"241","refvar":"C","qvar":"T","qpos":"213","qlength":"29876","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-1779/2020|EPI_ISL_424260|2020-03-22","refpos":"1059","refvar":"C","qvar":"T","qpos":"1031","qlength":"29876","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-UW-1779/2020|EPI_ISL_424260|2020-03-22","refpos":"3037","refvar":"C","qvar":"T","qpos":"3009","qlength":"29876","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-UW-1779/2020|EPI_ISL_424260|2020-03-22","refpos":"10319","refvar":"C","qvar":"T","qpos":"10291","qlength":"29876","protein":"NSP5","variant":"L89F","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/WA-UW-1779/2020|EPI_ISL_424260|2020-03-22","refpos":"14408","refvar":"C","qvar":"T","qpos":"14380","qlength":"29876","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-UW-1779/2020|EPI_ISL_424260|2020-03-22","refpos":"20755","refvar":"A","qvar":"C","qpos":"20727","qlength":"29876","protein":"NSP16","variant":"S33R","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/USA/WA-UW-1779/2020|EPI_ISL_424260|2020-03-22","refpos":"23403","refvar":"A","qvar":"G","qpos":"23375","qlength":"29876","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-UW-1779/2020|EPI_ISL_424260|2020-03-22","refpos":"25563","refvar":"G","qvar":"T","qpos":"25535","qlength":"29876","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-UW-1779/2020|EPI_ISL_424260|2020-03-22","refpos":"25677","refvar":"G","qvar":"T","qpos":"25649","qlength":"29876","protein":"ORF3a","variant":"L95F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-UW-2119/2020|EPI_ISL_426091|2020-03-25","refpos":"241","refvar":"C","qvar":"T","qpos":"240","qlength":"29863","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-2119/2020|EPI_ISL_426091|2020-03-25","refpos":"1059","refvar":"C","qvar":"T","qpos":"1058","qlength":"29863","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-UW-2119/2020|EPI_ISL_426091|2020-03-25","refpos":"3037","refvar":"C","qvar":"T","qpos":"3036","qlength":"29863","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-UW-2119/2020|EPI_ISL_426091|2020-03-25","refpos":"14408","refvar":"C","qvar":"T","qpos":"14407","qlength":"29863","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-UW-2119/2020|EPI_ISL_426091|2020-03-25","refpos":"23403","refvar":"A","qvar":"G","qpos":"23402","qlength":"29863","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-UW-2119/2020|EPI_ISL_426091|2020-03-25","refpos":"25563","refvar":"G","qvar":"T","qpos":"25562","qlength":"29863","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-UW-2119/2020|EPI_ISL_426091|2020-03-25","refpos":"29553","refvar":"G","qvar":"A","qpos":"29552","qlength":"29863","protein":"intergenic","variant":"29553","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW386/2020|EPI_ISL_418951|2020-03-16","refpos":"241","refvar":"C","qvar":"T","qpos":"207","qlength":"29867","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW386/2020|EPI_ISL_418951|2020-03-16","refpos":"1059","refvar":"C","qvar":"T","qpos":"1025","qlength":"29867","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-UW386/2020|EPI_ISL_418951|2020-03-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"3003","qlength":"29867","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-UW386/2020|EPI_ISL_418951|2020-03-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14374","qlength":"29867","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WA-UW386/2020|EPI_ISL_418951|2020-03-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23369","qlength":"29867","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-UW386/2020|EPI_ISL_418951|2020-03-16","refpos":"25563","refvar":"G","qvar":"T","qpos":"25529","qlength":"29867","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WA-UW386/2020|EPI_ISL_418951|2020-03-16","refpos":"29553","refvar":"G","qvar":"A","qpos":"29519","qlength":"29867","protein":"intergenic","variant":"29553","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-101/2020|EPI_ISL_425158|2020-03-31","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-101/2020|EPI_ISL_425158|2020-03-31","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-101/2020|EPI_ISL_425158|2020-03-31","refpos":"11417","refvar":"G","qvar":"T","qpos":"11363","qlength":"29782","protein":"NSP6","variant":"V149F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/WI-UW-101/2020|EPI_ISL_425158|2020-03-31","refpos":"14073","refvar":"T","qvar":"C","qpos":"14019","qlength":"29782","protein":"NSP12b","variant":"D202D","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-101/2020|EPI_ISL_425158|2020-03-31","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-101/2020|EPI_ISL_425158|2020-03-31","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-101/2020|EPI_ISL_425158|2020-03-31","refpos":"23947","refvar":"A","qvar":"G","qpos":"23893","qlength":"29782","protein":"S","variant":"K795K","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-101/2020|EPI_ISL_425158|2020-03-31","refpos":"25855","refvar":"G","qvar":"T","qpos":"25801","qlength":"29782","protein":"ORF3a","variant":"D155Y","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WI-UW-133/2020|EPI_ISL_427440|2020-04-12","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-133/2020|EPI_ISL_427440|2020-04-12","refpos":"643","refvar":"C","qvar":"T","qpos":"589","qlength":"29782","protein":"NSP1","variant":"N126N","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/WI-UW-133/2020|EPI_ISL_427440|2020-04-12","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-133/2020|EPI_ISL_427440|2020-04-12","refpos":"6730","refvar":"C","qvar":"T","qpos":"6676","qlength":"29782","protein":"NSP3","variant":"N1337N","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-133/2020|EPI_ISL_427440|2020-04-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-133/2020|EPI_ISL_427440|2020-04-12","refpos":"18214","refvar":"G","qvar":"T","qpos":"18160","qlength":"29782","protein":"NSP14","variant":"G59C","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WI-UW-133/2020|EPI_ISL_427440|2020-04-12","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-26/2020|EPI_ISL_421284|2020-03-24","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29611","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-26/2020|EPI_ISL_421284|2020-03-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29611","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-26/2020|EPI_ISL_421284|2020-03-24","refpos":"3871","refvar":"G","qvar":"T","qpos":"3817","qlength":"29611","protein":"NSP3","variant":"K384N","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-26/2020|EPI_ISL_421284|2020-03-24","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29611","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-26/2020|EPI_ISL_421284|2020-03-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29611","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-309/2020|EPI_ISL_436603|2020-04-16","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-309/2020|EPI_ISL_436603|2020-04-16","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-309/2020|EPI_ISL_436603|2020-04-16","refpos":"5622","refvar":"C","qvar":"T","qpos":"5568","qlength":"29782","protein":"NSP3","variant":"P968L","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-309/2020|EPI_ISL_436603|2020-04-16","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-309/2020|EPI_ISL_436603|2020-04-16","refpos":"15354","refvar":"T","qvar":"C","qpos":"15300","qlength":"29782","protein":"NSP12b","variant":"L629L","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-309/2020|EPI_ISL_436603|2020-04-16","refpos":"18877","refvar":"C","qvar":"T","qpos":"18823","qlength":"29782","protein":"NSP14","variant":"C279C","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WI-UW-309/2020|EPI_ISL_436603|2020-04-16","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-309/2020|EPI_ISL_436603|2020-04-16","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29776","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29776","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29776","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"5310","refvar":"C","qvar":"T","qpos":"5256","qlength":"29776","protein":"NSP3","variant":"T864I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"12294","refvar":"C","qvar":"T","qpos":"12240","qlength":"29776","protein":"NSP8","variant":"T68I","varclass":"SNP","annotation":"Non-Structural protein 8"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29776","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29776","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"25511","refvar":"C","qvar":"T","qpos":"25457","qlength":"29776","protein":"ORF3a","variant":"S40L","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29776","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WI-UW-458/2020|EPI_ISL_484833|2020-06-18","refpos":"29743","refvar":"CGGAGT","qvar":".","qpos":"29688","qlength":"29776","protein":"3'UTR","variant":"29743","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"696","refvar":"A","qvar":"C","qpos":"642","qlength":"29782","protein":"NSP1","variant":"D144A","varclass":"SNP","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"3871","refvar":"G","qvar":"T","qpos":"3817","qlength":"29782","protein":"NSP3","variant":"K384N","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"3931","refvar":"T","qvar":"C","qpos":"3877","qlength":"29782","protein":"NSP3","variant":"V404V","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"4226","refvar":"C","qvar":"T","qpos":"4172","qlength":"29782","protein":"NSP3","variant":"P503S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"5672","refvar":"C","qvar":"T","qpos":"5618","qlength":"29782","protein":"NSP3","variant":"P985S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"7837","refvar":"A","qvar":"C","qpos":"7783","qlength":"29782","protein":"NSP3","variant":"L1706F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"19677","refvar":"G","qvar":"T","qpos":"19623","qlength":"29782","protein":"NSP15","variant":"Q19H","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-609/2020|EPI_ISL_484984|2020-06-24","refpos":"28977","refvar":"C","qvar":"T","qpos":"28923","qlength":"29782","protein":"N","variant":"S235F","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WI-UW-644/2020|EPI_ISL_491335|2020-06-26","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-644/2020|EPI_ISL_491335|2020-06-26","refpos":"1059","refvar":"C","qvar":"T","qpos":"1005","qlength":"29782","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WI-UW-644/2020|EPI_ISL_491335|2020-06-26","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-644/2020|EPI_ISL_491335|2020-06-26","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-644/2020|EPI_ISL_491335|2020-06-26","refpos":"18985","refvar":"G","qvar":"T","qpos":"18931","qlength":"29782","protein":"NSP14","variant":"V316F","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WI-UW-644/2020|EPI_ISL_491335|2020-06-26","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-644/2020|EPI_ISL_491335|2020-06-26","refpos":"25563","refvar":"G","qvar":"T","qpos":"25509","qlength":"29782","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WI-UW-644/2020|EPI_ISL_491335|2020-06-26","refpos":"27147","refvar":"G","qvar":"T","qpos":"27093","qlength":"29782","protein":"M","variant":"D209Y","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"2549","refvar":"G","qvar":"A","qpos":"2495","qlength":"29782","protein":"NSP2","variant":"D582N","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"4288","refvar":"G","qvar":"A","qpos":"4234","qlength":"29782","protein":"NSP3","variant":"E523E","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"10815","refvar":"C","qvar":"T","qpos":"10761","qlength":"29782","protein":"NSP5","variant":"S254F","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"14599","refvar":"C","qvar":"T","qpos":"14545","qlength":"29782","protein":"NSP12b","variant":"N377N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"15732","refvar":"G","qvar":"T","qpos":"15678","qlength":"29782","protein":"NSP12b","variant":"V755V","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"19143","refvar":"T","qvar":"C","qpos":"19089","qlength":"29782","protein":"NSP14","variant":"Y368Y","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"19657","refvar":"G","qvar":"A","qpos":"19603","qlength":"29782","protein":"NSP15","variant":"G13R","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"20268","refvar":"A","qvar":"G","qpos":"20214","qlength":"29782","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-714/2020|EPI_ISL_491390|2020-06-29","refpos":"29614","refvar":"C","qvar":"T","qpos":"29560","qlength":"29782","protein":"ORF10","variant":"C19C","varclass":"SNP_silent","annotation":"ORF10 protein"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"241","refvar":"C","qvar":"T","qpos":"187","qlength":"29782","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"696","refvar":"A","qvar":"C","qpos":"642","qlength":"29782","protein":"NSP1","variant":"D144A","varclass":"SNP","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"3037","refvar":"C","qvar":"T","qpos":"2983","qlength":"29782","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"3871","refvar":"G","qvar":"T","qpos":"3817","qlength":"29782","protein":"NSP3","variant":"K384N","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"3931","refvar":"T","qvar":"C","qpos":"3877","qlength":"29782","protein":"NSP3","variant":"V404V","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"4226","refvar":"C","qvar":"T","qpos":"4172","qlength":"29782","protein":"NSP3","variant":"P503S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"4832","refvar":"C","qvar":"T","qpos":"4778","qlength":"29782","protein":"NSP3","variant":"Q704Q","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"5672","refvar":"C","qvar":"T","qpos":"5618","qlength":"29782","protein":"NSP3","variant":"P985S","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"7837","refvar":"A","qvar":"C","qpos":"7783","qlength":"29782","protein":"NSP3","variant":"L1706F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"14408","refvar":"C","qvar":"T","qpos":"14354","qlength":"29782","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"16017","refvar":"C","qvar":"T","qpos":"15963","qlength":"29782","protein":"NSP12b","variant":"F850F","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"21137","refvar":"A","qvar":"G","qpos":"21083","qlength":"29782","protein":"NSP16","variant":"K160R","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WI-UW-720/2020|EPI_ISL_491395|2020-06-29","refpos":"28977","refvar":"C","qvar":"T","qpos":"28923","qlength":"29782","protein":"N","variant":"S235F","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WY-WYPHL-00022/2020|EPI_ISL_462915|2020-03-20","refpos":"241","refvar":"C","qvar":"T","qpos":"238","qlength":"29863","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WY-WYPHL-00022/2020|EPI_ISL_462915|2020-03-20","refpos":"1059","refvar":"C","qvar":"T","qpos":"1056","qlength":"29863","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WY-WYPHL-00022/2020|EPI_ISL_462915|2020-03-20","refpos":"3037","refvar":"C","qvar":"T","qpos":"3034","qlength":"29863","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WY-WYPHL-00022/2020|EPI_ISL_462915|2020-03-20","refpos":"10870","refvar":"G","qvar":"T","qpos":"10867","qlength":"29863","protein":"NSP5","variant":"L272L","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/USA/WY-WYPHL-00022/2020|EPI_ISL_462915|2020-03-20","refpos":"14408","refvar":"C","qvar":"T","qpos":"14405","qlength":"29863","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WY-WYPHL-00022/2020|EPI_ISL_462915|2020-03-20","refpos":"20465","refvar":"A","qvar":"G","qpos":"20462","qlength":"29863","protein":"NSP15","variant":"D282G","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WY-WYPHL-00022/2020|EPI_ISL_462915|2020-03-20","refpos":"23403","refvar":"A","qvar":"G","qpos":"23400","qlength":"29863","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WY-WYPHL-00022/2020|EPI_ISL_462915|2020-03-20","refpos":"25563","refvar":"G","qvar":"T","qpos":"25560","qlength":"29863","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WY-WYPHL-00085/2020|EPI_ISL_462976|2020-03-30","refpos":"241","refvar":"C","qvar":"T","qpos":"238","qlength":"29864","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WY-WYPHL-00085/2020|EPI_ISL_462976|2020-03-30","refpos":"1059","refvar":"C","qvar":"T","qpos":"1056","qlength":"29864","protein":"NSP2","variant":"T85I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WY-WYPHL-00085/2020|EPI_ISL_462976|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"3034","qlength":"29864","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WY-WYPHL-00085/2020|EPI_ISL_462976|2020-03-30","refpos":"11916","refvar":"C","qvar":"T","qpos":"11913","qlength":"29864","protein":"NSP7","variant":"S25L","varclass":"SNP","annotation":"Non-Structural protein 7"}
{"sample":"hCoV-19/USA/WY-WYPHL-00085/2020|EPI_ISL_462976|2020-03-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14405","qlength":"29864","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/WY-WYPHL-00085/2020|EPI_ISL_462976|2020-03-30","refpos":"16611","refvar":"C","qvar":"T","qpos":"16608","qlength":"29864","protein":"NSP13","variant":"T125T","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WY-WYPHL-00085/2020|EPI_ISL_462976|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23400","qlength":"29864","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WY-WYPHL-00085/2020|EPI_ISL_462976|2020-03-30","refpos":"25563","refvar":"G","qvar":"T","qpos":"25560","qlength":"29864","protein":"ORF3a","variant":"Q57H","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WY-WYPHL-00085/2020|EPI_ISL_462976|2020-03-30","refpos":"25708","refvar":"C","qvar":"T","qpos":"25705","qlength":"29864","protein":"ORF3a","variant":"L106F","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Wales/PHWC-16468F/2020|EPI_ISL_474212|2020-05-06","refpos":"241","refvar":"C","qvar":"T","qpos":"211","qlength":"29873","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-16468F/2020|EPI_ISL_474212|2020-05-06","refpos":"3037","refvar":"C","qvar":"T","qpos":"3007","qlength":"29873","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-16468F/2020|EPI_ISL_474212|2020-05-06","refpos":"9438","refvar":"C","qvar":"T","qpos":"9408","qlength":"29873","protein":"NSP4","variant":"T295I","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Wales/PHWC-16468F/2020|EPI_ISL_474212|2020-05-06","refpos":"14408","refvar":"C","qvar":"T","qpos":"14378","qlength":"29873","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-16468F/2020|EPI_ISL_474212|2020-05-06","refpos":"23403","refvar":"A","qvar":"G","qpos":"23373","qlength":"29873","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-16468F/2020|EPI_ISL_474212|2020-05-06","refpos":"26589","refvar":"G","qvar":"T","qpos":"26559","qlength":"29873","protein":"M","variant":"V23L","varclass":"SNP","annotation":"Membrane"}
{"sample":"hCoV-19/Wales/PHWC-16468F/2020|EPI_ISL_474212|2020-05-06","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28851","qlength":"29873","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-16468F/2020|EPI_ISL_474212|2020-05-06","refpos":"29777","refvar":"G","qvar":"T","qpos":"29747","qlength":"29873","protein":"3'UTR","variant":"29777","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"241","refvar":"C","qvar":"T","qpos":"203","qlength":"29857","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"3037","refvar":"C","qvar":"T","qpos":"2999","qlength":"29857","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"7878","refvar":"T","qvar":"C","qpos":"7840","qlength":"29857","protein":"NSP3","variant":"I1720T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"10097","refvar":"G","qvar":"A","qpos":"10059","qlength":"29857","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"14408","refvar":"C","qvar":"T","qpos":"14370","qlength":"29857","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"16348","refvar":"T","qvar":"C","qpos":"16310","qlength":"29857","protein":"NSP13","variant":"S38P","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"21575","refvar":"C","qvar":"T","qpos":"21537","qlength":"29857","protein":"S","variant":"L5F","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"23403","refvar":"A","qvar":"G","qpos":"23365","qlength":"29857","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"23731","refvar":"C","qvar":"T","qpos":"23693","qlength":"29857","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"28580","refvar":"G","qvar":"T","qpos":"28542","qlength":"29857","protein":"N","variant":"D103Y","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-165B07/2020|EPI_ISL_490767|2020-06-13","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28843","qlength":"29857","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-165B34/2020|EPI_ISL_490769|2020-06-05","refpos":"241","refvar":"C","qvar":"T","qpos":"203","qlength":"29819","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-165B34/2020|EPI_ISL_490769|2020-06-05","refpos":"3037","refvar":"C","qvar":"T","qpos":"2999","qlength":"29819","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-165B34/2020|EPI_ISL_490769|2020-06-05","refpos":"3049","refvar":"T","qvar":"C","qpos":"3011","qlength":"29819","protein":"NSP3","variant":"D110D","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-165B34/2020|EPI_ISL_490769|2020-06-05","refpos":"14408","refvar":"C","qvar":"T","qpos":"14370","qlength":"29819","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-165B34/2020|EPI_ISL_490769|2020-06-05","refpos":"21624","refvar":"G","qvar":"T","qpos":"21586","qlength":"29819","protein":"S","variant":"R21I","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-165B34/2020|EPI_ISL_490769|2020-06-05","refpos":"23403","refvar":"A","qvar":"G","qpos":"23365","qlength":"29819","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-165B34/2020|EPI_ISL_490769|2020-06-05","refpos":"27877","refvar":"G","qvar":"T","qpos":"27839","qlength":"29819","protein":"ORF7b","variant":"C41F","varclass":"SNP","annotation":"ORF7b protein"}
{"sample":"hCoV-19/Wales/PHWC-165B34/2020|EPI_ISL_490769|2020-06-05","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28843","qlength":"29819","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-166122/2020|EPI_ISL_490839|2020-06-18","refpos":"241","refvar":"C","qvar":"T","qpos":"218","qlength":"29850","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-166122/2020|EPI_ISL_490839|2020-06-18","refpos":"2638","refvar":"C","qvar":"T","qpos":"2615","qlength":"29850","protein":"NSP2","variant":"L611L","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Wales/PHWC-166122/2020|EPI_ISL_490839|2020-06-18","refpos":"3037","refvar":"C","qvar":"T","qpos":"3014","qlength":"29850","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-166122/2020|EPI_ISL_490839|2020-06-18","refpos":"11083","refvar":"G","qvar":"T","qpos":"11060","qlength":"29850","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Wales/PHWC-166122/2020|EPI_ISL_490839|2020-06-18","refpos":"14408","refvar":"C","qvar":"T","qpos":"14385","qlength":"29850","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-166122/2020|EPI_ISL_490839|2020-06-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23380","qlength":"29850","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-166122/2020|EPI_ISL_490839|2020-06-18","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28858","qlength":"29850","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-166122/2020|EPI_ISL_490839|2020-06-18","refpos":"29825","refvar":"G","qvar":"A","qpos":"29802","qlength":"29850","protein":"3'UTR","variant":"29825","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-168481/2020|EPI_ISL_494245|2020-04-19","refpos":"241","refvar":"C","qvar":"T","qpos":"211","qlength":"29823","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-168481/2020|EPI_ISL_494245|2020-04-19","refpos":"3037","refvar":"C","qvar":"T","qpos":"3007","qlength":"29823","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-168481/2020|EPI_ISL_494245|2020-04-19","refpos":"10722","refvar":"T","qvar":"C","qpos":"10692","qlength":"29823","protein":"NSP5","variant":"F223S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-168481/2020|EPI_ISL_494245|2020-04-19","refpos":"14408","refvar":"C","qvar":"T","qpos":"14378","qlength":"29823","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-168481/2020|EPI_ISL_494245|2020-04-19","refpos":"19602","refvar":"C","qvar":"T","qpos":"19572","qlength":"29823","protein":"NSP14","variant":"N521N","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Wales/PHWC-168481/2020|EPI_ISL_494245|2020-04-19","refpos":"23403","refvar":"A","qvar":"G","qpos":"23373","qlength":"29823","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-168481/2020|EPI_ISL_494245|2020-04-19","refpos":"26313","refvar":"C","qvar":"T","qpos":"26283","qlength":"29823","protein":"E","variant":"F23F","varclass":"SNP_silent","annotation":"Envelope"}
{"sample":"hCoV-19/Wales/PHWC-168481/2020|EPI_ISL_494245|2020-04-19","refpos":"27670","refvar":"G","qvar":"C","qpos":"27640","qlength":"29823","protein":"ORF7a","variant":"V93L","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/Wales/PHWC-168481/2020|EPI_ISL_494245|2020-04-19","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28851","qlength":"29823","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"4002","refvar":"C","qvar":"T","qpos":"4002","qlength":"29903","protein":"NSP3","variant":"T428I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"10097","refvar":"G","qvar":"A","qpos":"10097","qlength":"29903","protein":"NSP5","variant":"G15S","varclass":"SNP","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"11620","refvar":"C","qvar":"T","qpos":"11620","qlength":"29903","protein":"NSP6","variant":"F216F","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"13536","refvar":"C","qvar":"T","qpos":"13536","qlength":"29903","protein":"NSP12b","variant":"Y23Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"21538","refvar":"G","qvar":"T","qpos":"21538","qlength":"29903","protein":"NSP16","variant":"V294F","varclass":"SNP","annotation":"2'-O-ribose methyltransferase"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"23731","refvar":"C","qvar":"T","qpos":"23731","qlength":"29903","protein":"S","variant":"T723T","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-25542/2020|EPI_ISL_421003|2020-03-23","refpos":"29774","refvar":"C","qvar":"T","qpos":"29774","qlength":"29903","protein":"3'UTR","variant":"29774","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-25973/2020|EPI_ISL_422067|2020-03-24","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-25973/2020|EPI_ISL_422067|2020-03-24","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-25973/2020|EPI_ISL_422067|2020-03-24","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-25973/2020|EPI_ISL_422067|2020-03-24","refpos":"14741","refvar":"C","qvar":"T","qpos":"14741","qlength":"29903","protein":"NSP12b","variant":"S425F","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-25973/2020|EPI_ISL_422067|2020-03-24","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-26444/2020|EPI_ISL_422102|2020-03-27","refpos":"241","refvar":"C","qvar":"T","qpos":"239","qlength":"29901","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-26444/2020|EPI_ISL_422102|2020-03-27","refpos":"3037","refvar":"C","qvar":"T","qpos":"3035","qlength":"29901","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-26444/2020|EPI_ISL_422102|2020-03-27","refpos":"14396","refvar":"C","qvar":"T","qpos":"14394","qlength":"29901","protein":"NSP12b","variant":"T310I","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-26444/2020|EPI_ISL_422102|2020-03-27","refpos":"14408","refvar":"C","qvar":"T","qpos":"14406","qlength":"29901","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-26444/2020|EPI_ISL_422102|2020-03-27","refpos":"23403","refvar":"A","qvar":"G","qpos":"23401","qlength":"29901","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-26444/2020|EPI_ISL_422102|2020-03-27","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28879","qlength":"29901","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-29C49/2020|EPI_ISL_432196|2020-04-05","refpos":"241","refvar":"C","qvar":"T","qpos":"241","qlength":"29903","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-29C49/2020|EPI_ISL_432196|2020-04-05","refpos":"3037","refvar":"C","qvar":"T","qpos":"3037","qlength":"29903","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-29C49/2020|EPI_ISL_432196|2020-04-05","refpos":"14408","refvar":"C","qvar":"T","qpos":"14408","qlength":"29903","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-29C49/2020|EPI_ISL_432196|2020-04-05","refpos":"19170","refvar":"C","qvar":"T","qpos":"19170","qlength":"29903","protein":"NSP14","variant":"F377F","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Wales/PHWC-29C49/2020|EPI_ISL_432196|2020-04-05","refpos":"19509","refvar":"G","qvar":"A","qpos":"19509","qlength":"29903","protein":"NSP14","variant":"E490E","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Wales/PHWC-29C49/2020|EPI_ISL_432196|2020-04-05","refpos":"23403","refvar":"A","qvar":"G","qpos":"23403","qlength":"29903","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-29C49/2020|EPI_ISL_432196|2020-04-05","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28881","qlength":"29903","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-29ECB/2020|EPI_ISL_432368|2020-04-04","refpos":"241","refvar":"C","qvar":"T","qpos":"230","qlength":"29892","protein":"5'UTR","variant":"241","varclass":"extragenic"}
{"sample":"hCoV-19/Wales/PHWC-29ECB/2020|EPI_ISL_432368|2020-04-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"3026","qlength":"29892","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-29ECB/2020|EPI_ISL_432368|2020-04-04","refpos":"6990","refvar":"C","qvar":"T","qpos":"6979","qlength":"29892","protein":"NSP3","variant":"S1424F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-29ECB/2020|EPI_ISL_432368|2020-04-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14397","qlength":"29892","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-29ECB/2020|EPI_ISL_432368|2020-04-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23392","qlength":"29892","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Wales/PHWC-29ECB/2020|EPI_ISL_432368|2020-04-04","refpos":"27703","refvar":"G","qvar":"T","qpos":"27692","qlength":"29892","protein":"ORF7a","variant":"V104F","varclass":"SNP","annotation":"ORF7a protein"}
{"sample":"hCoV-19/England/CAMB-7DB67/2020|EPI_ISL_441742|2020-04-07","refpos":"247","refvar":"G","qvar":"A","qpos":"193","qlength":"29782","protein":"5'UTR","variant":"247","varclass":"extragenic"}
{"sample":"hCoV-19/England/CAMB-7DB67/2020|EPI_ISL_441742|2020-04-07","refpos":"1612","refvar":"C","qvar":"T","qpos":"1558","qlength":"29782","protein":"NSP2","variant":"N269N","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/CAMB-7DB67/2020|EPI_ISL_441742|2020-04-07","refpos":"2480","refvar":"A","qvar":"G","qpos":"2426","qlength":"29782","protein":"NSP2","variant":"I559V","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/CAMB-7DB67/2020|EPI_ISL_441742|2020-04-07","refpos":"2558","refvar":"C","qvar":"T","qpos":"2504","qlength":"29782","protein":"NSP2","variant":"P585S","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/CAMB-7DB67/2020|EPI_ISL_441742|2020-04-07","refpos":"9474","refvar":"C","qvar":"T","qpos":"9420","qlength":"29782","protein":"NSP4","variant":"A307V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/CAMB-7DB67/2020|EPI_ISL_441742|2020-04-07","refpos":"11083","refvar":"G","qvar":"T","qpos":"11029","qlength":"29782","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/CAMB-7DB67/2020|EPI_ISL_441742|2020-04-07","refpos":"11491","refvar":"T","qvar":"C","qpos":"11437","qlength":"29782","protein":"NSP6","variant":"S173S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/CAMB-7DB67/2020|EPI_ISL_441742|2020-04-07","refpos":"14805","refvar":"C","qvar":"T","qpos":"14751","qlength":"29782","protein":"NSP12b","variant":"Y446Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/CAMB-7DB67/2020|EPI_ISL_441742|2020-04-07","refpos":"26144","refvar":"G","qvar":"T","qpos":"26090","qlength":"29782","protein":"ORF3a","variant":"G251V","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Australia/NSW303/2020|EPI_ISL_451567|2020-03-30","refpos":"313","refvar":"C","qvar":"T","qpos":"47","qlength":"29408","protein":"NSP1","variant":"L16L","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/Australia/NSW303/2020|EPI_ISL_451567|2020-03-30","refpos":"3037","refvar":"C","qvar":"T","qpos":"2771","qlength":"29408","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/NSW303/2020|EPI_ISL_451567|2020-03-30","refpos":"14408","refvar":"C","qvar":"T","qpos":"14142","qlength":"29408","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/NSW303/2020|EPI_ISL_451567|2020-03-30","refpos":"23403","refvar":"A","qvar":"G","qpos":"23137","qlength":"29408","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/NSW303/2020|EPI_ISL_451567|2020-03-30","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28615","qlength":"29408","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/USA/WA-S1087/2020|EPI_ISL_463577|2020-04-29","refpos":"354","refvar":"G","qvar":"A","qpos":"341","qlength":"29857","protein":"NSP1","variant":"G30D","varclass":"SNP","annotation":"Leader protein"}
{"sample":"hCoV-19/USA/WA-S1087/2020|EPI_ISL_463577|2020-04-29","refpos":"2070","refvar":"C","qvar":"T","qpos":"2057","qlength":"29857","protein":"NSP2","variant":"T422I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/USA/WA-S1087/2020|EPI_ISL_463577|2020-04-29","refpos":"8782","refvar":"C","qvar":"T","qpos":"8769","qlength":"29857","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/WA-S1087/2020|EPI_ISL_463577|2020-04-29","refpos":"17747","refvar":"C","qvar":"T","qpos":"17734","qlength":"29857","protein":"NSP13","variant":"P504L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S1087/2020|EPI_ISL_463577|2020-04-29","refpos":"17858","refvar":"A","qvar":"G","qpos":"17845","qlength":"29857","protein":"NSP13","variant":"Y541C","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S1087/2020|EPI_ISL_463577|2020-04-29","refpos":"18060","refvar":"C","qvar":"T","qpos":"18047","qlength":"29857","protein":"NSP14","variant":"L7L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WA-S1087/2020|EPI_ISL_463577|2020-04-29","refpos":"19839","refvar":"T","qvar":"C","qpos":"19826","qlength":"29857","protein":"NSP15","variant":"N73N","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/USA/WA-S1087/2020|EPI_ISL_463577|2020-04-29","refpos":"24075","refvar":"G","qvar":"A","qpos":"24062","qlength":"29857","protein":"S","variant":"G838D","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/England/NOTT-110D14/2020|EPI_ISL_448409|2020-04-29","refpos":"3338","refvar":"G","qvar":"T","qpos":"3335","qlength":"29900","protein":"NSP3","variant":"V207L","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NOTT-110D14/2020|EPI_ISL_448409|2020-04-29","refpos":"11474","refvar":"A","qvar":"G","qpos":"11471","qlength":"29900","protein":"NSP6","variant":"I168V","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/NOTT-110D14/2020|EPI_ISL_448409|2020-04-29","refpos":"14817","refvar":"T","qvar":"C","qpos":"14814","qlength":"29900","protein":"NSP12b","variant":"N450N","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NOTT-110D14/2020|EPI_ISL_448409|2020-04-29","refpos":"20270","refvar":"C","qvar":"T","qpos":"20267","qlength":"29900","protein":"NSP15","variant":"A217V","varclass":"SNP","annotation":"endoRNAse"}
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{"sample":"hCoV-19/England/NOTT-110D14/2020|EPI_ISL_448409|2020-04-29","refpos":"29751","refvar":"G","qvar":"C","qpos":"29748","qlength":"29900","protein":"3'UTR","variant":"29751","varclass":"extragenic"}
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{"sample":"hCoV-19/USA/MA-MGH-00566/2020|EPI_ISL_460285|2020-03-22","refpos":"13180","refvar":"T","qvar":"C","qpos":"13152","qlength":"29838","protein":"NSP10","variant":"G52G","varclass":"SNP_silent","annotation":"Growth-factor-like protein"}
{"sample":"hCoV-19/USA/MA-MGH-00566/2020|EPI_ISL_460285|2020-03-22","refpos":"16084","refvar":"C","qvar":"T","qpos":"16056","qlength":"29838","protein":"NSP12b","variant":"H873Y","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/USA/MA-MGH-00566/2020|EPI_ISL_460285|2020-03-22","refpos":"18736","refvar":"T","qvar":"C","qpos":"18708","qlength":"29838","protein":"NSP14","variant":"F233L","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/MA-MGH-00566/2020|EPI_ISL_460285|2020-03-22","refpos":"24034","refvar":"C","qvar":"T","qpos":"24006","qlength":"29838","protein":"S","variant":"N824N","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/USA/MA-MGH-00566/2020|EPI_ISL_460285|2020-03-22","refpos":"26729","refvar":"T","qvar":"C","qpos":"26701","qlength":"29838","protein":"M","variant":"A69A","varclass":"SNP_silent","annotation":"Membrane"}
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{"sample":"hCoV-19/USA/MN-MDH-91/2020|EPI_ISL_460072|2020-03-15","refpos":"17679","refvar":"G","qvar":"A","qpos":"17675","qlength":"29849","protein":"NSP13","variant":"T481T","varclass":"SNP_silent","annotation":"Helicase"}
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{"sample":"hCoV-19/USA/MN-MDH-91/2020|EPI_ISL_460072|2020-03-15","refpos":"24034","refvar":"C","qvar":"T","qpos":"24030","qlength":"29849","protein":"S","variant":"N824N","varclass":"SNP_silent","annotation":"Spike"}
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{"sample":"hCoV-19/USA/WI-UW-166/2020|EPI_ISL_428262|2020-03-17","refpos":"490","refvar":"T","qvar":"A","qpos":"436","qlength":"29782","protein":"NSP1","variant":"D75E","varclass":"SNP","annotation":"Leader protein"}
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{"sample":"hCoV-19/Belgium/UGent-17/2020|EPI_ISL_425057|2020-03-26","refpos":"514","refvar":"T","qvar":"C","qpos":"514","qlength":"29900","protein":"NSP1","variant":"H83H","varclass":"SNP_silent","annotation":"Leader protein"}
{"sample":"hCoV-19/Belgium/UGent-17/2020|EPI_ISL_425057|2020-03-26","refpos":"1605","refvar":"ATG","qvar":".","qpos":"1604","qlength":"29900","protein":"NSP2","variant":"D268","varclass":"deletion","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Belgium/UGent-17/2020|EPI_ISL_425057|2020-03-26","refpos":"17410","refvar":"C","qvar":"T","qpos":"17407","qlength":"29900","protein":"NSP13","variant":"R392C","varclass":"SNP","annotation":"Helicase"}
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{"sample":"hCoV-19/Netherlands/NoordBrabant_53/2020|EPI_ISL_415509|2020","refpos":"514","refvar":"T","qvar":"C","qpos":"471","qlength":"29783","protein":"NSP1","variant":"H83H","varclass":"SNP_silent","annotation":"Leader protein"}
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{"sample":"hCoV-19/Netherlands/NoordBrabant_53/2020|EPI_ISL_415509|2020","refpos":"2323","refvar":"G","qvar":"T","qpos":"2277","qlength":"29783","protein":"NSP2","variant":"L506F","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Netherlands/NoordBrabant_53/2020|EPI_ISL_415509|2020","refpos":"17410","refvar":"C","qvar":"T","qpos":"17364","qlength":"29783","protein":"NSP13","variant":"R392C","varclass":"SNP","annotation":"Helicase"}
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{"sample":"hCoV-19/USA/WA-UW-1741/2020|EPI_ISL_424238|2020-03-21","refpos":"3037","refvar":"C","qvar":"T","qpos":"2773","qlength":"29639","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-UW-1741/2020|EPI_ISL_424238|2020-03-21","refpos":"14408","refvar":"C","qvar":"T","qpos":"14144","qlength":"29639","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
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{"sample":"hCoV-19/USA/WA-UW-1741/2020|EPI_ISL_424238|2020-03-21","refpos":"29867","refvar":"TG","qvar":"AA","qpos":"29603","qlength":"29639","protein":"3'UTR","variant":"29867","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-UW-1741/2020|EPI_ISL_424238|2020-03-21","refpos":"29870","refvar":"C","qvar":"A","qpos":"29606","qlength":"29639","protein":"3'UTR","variant":"29870","varclass":"extragenic"}
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{"sample":"hCoV-19/Scotland/EDB2009/2020|EPI_ISL_491654|2020-04-18","refpos":"23403","refvar":"A","qvar":"G","qpos":"23349","qlength":"29782","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
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{"sample":"hCoV-19/Scotland/EDB2009/2020|EPI_ISL_491654|2020-04-18","refpos":"28881","refvar":"GGG","qvar":"AAC","qpos":"28827","qlength":"29782","protein":"N","variant":"RG203KR","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/RMRC159/2020|EPI_ISL_455760|2020-05-07","refpos":"1123","refvar":"A","qvar":"G","qpos":"1093","qlength":"29656","protein":"NSP2","variant":"P106P","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/India/RMRC159/2020|EPI_ISL_455760|2020-05-07","refpos":"2143","refvar":"C","qvar":"T","qpos":"2113","qlength":"29656","protein":"NSP2","variant":"P446P","varclass":"SNP_silent","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/India/RMRC159/2020|EPI_ISL_455760|2020-05-07","refpos":"8782","refvar":"C","qvar":"T","qpos":"8752","qlength":"29656","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/India/RMRC159/2020|EPI_ISL_455760|2020-05-07","refpos":"18744","refvar":"C","qvar":"T","qpos":"18714","qlength":"29656","protein":"NSP14","variant":"Y235Y","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
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{"sample":"hCoV-19/India/RMRC159/2020|EPI_ISL_455760|2020-05-07","refpos":"28144","refvar":"T","qvar":"C","qpos":"28114","qlength":"29656","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/India/RMRC159/2020|EPI_ISL_455760|2020-05-07","refpos":"28326","refvar":"G","qvar":"T","qpos":"28296","qlength":"29656","protein":"N","variant":"G18V","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/RMRC159/2020|EPI_ISL_455760|2020-05-07","refpos":"28878","refvar":"G","qvar":"A","qpos":"28848","qlength":"29656","protein":"N","variant":"S202N","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Australia/NSW945/2020|EPI_ISL_498768|2020-07-12","refpos":"1163","refvar":"A","qvar":"T","qpos":"897","qlength":"29408","protein":"NSP2","variant":"I120F","varclass":"SNP","annotation":"Non-Structural protein 2"}
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{"sample":"hCoV-19/Australia/NSW945/2020|EPI_ISL_498768|2020-07-12","refpos":"7540","refvar":"T","qvar":"C","qpos":"7274","qlength":"29408","protein":"NSP3","variant":"T1607T","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/NSW945/2020|EPI_ISL_498768|2020-07-12","refpos":"8950","refvar":"C","qvar":"T","qpos":"8684","qlength":"29408","protein":"NSP4","variant":"I132I","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Australia/NSW945/2020|EPI_ISL_498768|2020-07-12","refpos":"14408","refvar":"C","qvar":"T","qpos":"14142","qlength":"29408","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/NSW945/2020|EPI_ISL_498768|2020-07-12","refpos":"16647","refvar":"G","qvar":"T","qpos":"16381","qlength":"29408","protein":"NSP13","variant":"T137T","varclass":"SNP_silent","annotation":"Helicase"}
{"sample":"hCoV-19/Australia/NSW945/2020|EPI_ISL_498768|2020-07-12","refpos":"18555","refvar":"C","qvar":"T","qpos":"18289","qlength":"29408","protein":"NSP14","variant":"D172D","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Australia/NSW945/2020|EPI_ISL_498768|2020-07-12","refpos":"22480","refvar":"C","qvar":"T","qpos":"22214","qlength":"29408","protein":"S","variant":"F306F","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Australia/NSW945/2020|EPI_ISL_498768|2020-07-12","refpos":"22992","refvar":"G","qvar":"A","qpos":"22726","qlength":"29408","protein":"S","variant":"S477N","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/NSW945/2020|EPI_ISL_498768|2020-07-12","refpos":"23401","refvar":"G","qvar":"A","qpos":"23135","qlength":"29408","protein":"S","variant":"Q613Q","varclass":"SNP_silent","annotation":"Spike"}
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{"sample":"hCoV-19/USA/WA-UW371/2020|EPI_ISL_418938|2020-03-16","refpos":"8782","refvar":"C","qvar":"T","qpos":"8634","qlength":"29749","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
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{"sample":"hCoV-19/India/ILSCV15907/2020|EPI_ISL_463038|2020-05-11","refpos":"10978","refvar":"A","qvar":"G","qpos":"10948","qlength":"29737","protein":"NSP6","variant":"A2A","varclass":"SNP_silent","annotation":"Transmembrane protein"}
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{"sample":"hCoV-19/India/ILSCV15907/2020|EPI_ISL_463038|2020-05-11","refpos":"13730","refvar":"C","qvar":"T","qpos":"13700","qlength":"29737","protein":"NSP12b","variant":"A88V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/ILSCV15907/2020|EPI_ISL_463038|2020-05-11","refpos":"23929","refvar":"C","qvar":"T","qpos":"23899","qlength":"29737","protein":"S","variant":"Y789Y","varclass":"SNP_silent","annotation":"Spike"}
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{"sample":"hCoV-19/England/BRIS-1238B3/2020|EPI_ISL_442718|2020-04-06","refpos":"2891","refvar":"G","qvar":"A","qpos":"2837","qlength":"29782","protein":"NSP3","variant":"A58T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/BRIS-1238B3/2020|EPI_ISL_442718|2020-04-06","refpos":"21973","refvar":"T","qvar":"C","qpos":"21919","qlength":"29782","protein":"S","variant":"N137N","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-1238B3/2020|EPI_ISL_442718|2020-04-06","refpos":"28851","refvar":"G","qvar":"T","qpos":"28797","qlength":"29782","protein":"N","variant":"S193I","varclass":"SNP","annotation":"Nucleocapsid protein"}
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{"sample":"hCoV-19/England/BRIS-123B14/2020|EPI_ISL_442637|2020-04-07","refpos":"9266","refvar":"A","qvar":"G","qpos":"9212","qlength":"29782","protein":"NSP4","variant":"S238G","varclass":"SNP","annotation":"Transmembrane protein"}
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{"sample":"hCoV-19/England/BRIS-125E64/2020|EPI_ISL_443786|2020-03-30","refpos":"2891","refvar":"G","qvar":"A","qpos":"2837","qlength":"29782","protein":"NSP3","variant":"A58T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/Wales/PHWC-244CE/2020|EPI_ISL_419418|2020-03-18","refpos":"2891","refvar":"G","qvar":"A","qpos":"2889","qlength":"29901","protein":"NSP3","variant":"A58T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/Wales/PHWC-244CE/2020|EPI_ISL_419418|2020-03-18","refpos":"28851","refvar":"G","qvar":"T","qpos":"28849","qlength":"29901","protein":"N","variant":"S193I","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-24CB7/2020|EPI_ISL_420937|2020-03-21","refpos":"1440","refvar":"G","qvar":"A","qpos":"1440","qlength":"29901","protein":"NSP2","variant":"G212D","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Wales/PHWC-24CB7/2020|EPI_ISL_420937|2020-03-21","refpos":"2891","refvar":"G","qvar":"A","qpos":"2891","qlength":"29901","protein":"NSP3","variant":"A58T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/Wales/PHWC-24CB7/2020|EPI_ISL_420937|2020-03-21","refpos":"25669","refvar":"C","qvar":"T","qpos":"25669","qlength":"29901","protein":"ORF3a","variant":"H93Y","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Wales/PHWC-24CB7/2020|EPI_ISL_420937|2020-03-21","refpos":"28705","refvar":"T","qvar":"G","qpos":"28705","qlength":"29901","protein":"N","variant":"D144E","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-24CB7/2020|EPI_ISL_420937|2020-03-21","refpos":"28851","refvar":"G","qvar":"T","qpos":"28851","qlength":"29901","protein":"N","variant":"S193I","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-25779/2020|EPI_ISL_422039|2020-03-24","refpos":"1440","refvar":"G","qvar":"A","qpos":"1440","qlength":"29903","protein":"NSP2","variant":"G212D","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Wales/PHWC-25779/2020|EPI_ISL_422039|2020-03-24","refpos":"2891","refvar":"G","qvar":"A","qpos":"2891","qlength":"29903","protein":"NSP3","variant":"A58T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-25779/2020|EPI_ISL_422039|2020-03-24","refpos":"25669","refvar":"C","qvar":"T","qpos":"25669","qlength":"29903","protein":"ORF3a","variant":"H93Y","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Wales/PHWC-25779/2020|EPI_ISL_422039|2020-03-24","refpos":"28851","refvar":"G","qvar":"T","qpos":"28851","qlength":"29903","protein":"N","variant":"S193I","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-26D1C/2020|EPI_ISL_422040|2020-03-30","refpos":"1440","refvar":"G","qvar":"A","qpos":"1439","qlength":"29902","protein":"NSP2","variant":"G212D","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Wales/PHWC-26D1C/2020|EPI_ISL_422040|2020-03-30","refpos":"2891","refvar":"G","qvar":"A","qpos":"2890","qlength":"29902","protein":"NSP3","variant":"A58T","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-26D1C/2020|EPI_ISL_422040|2020-03-30","refpos":"28851","refvar":"G","qvar":"T","qpos":"28850","qlength":"29902","protein":"N","variant":"S193I","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"1457","refvar":"C","qvar":"T","qpos":"1457","qlength":"29903","protein":"NSP2","variant":"R218C","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"8782","refvar":"C","qvar":"T","qpos":"8782","qlength":"29903","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"9445","refvar":"T","qvar":"C","qpos":"9445","qlength":"29903","protein":"NSP4","variant":"L297L","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"17531","refvar":"T","qvar":"C","qpos":"17531","qlength":"29903","protein":"NSP13","variant":"I432T","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"17747","refvar":"C","qvar":"T","qpos":"17747","qlength":"29903","protein":"NSP13","variant":"P504L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"17858","refvar":"A","qvar":"G","qpos":"17858","qlength":"29903","protein":"NSP13","variant":"Y541C","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"18060","refvar":"C","qvar":"T","qpos":"18060","qlength":"29903","protein":"NSP14","variant":"L7L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"18756","refvar":"G","qvar":"T","qpos":"18756","qlength":"29903","protein":"NSP14","variant":"P239P","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"24694","refvar":"A","qvar":"T","qpos":"24694","qlength":"29903","protein":"S","variant":"G1044G","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Iceland/287/2020|EPI_ISL_417615|2020-03-18","refpos":"28144","refvar":"T","qvar":"C","qpos":"28144","qlength":"29903","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/England/SHEF-BFF8B/2020|EPI_ISL_418315|2020-03-25","refpos":"1473","refvar":"C","qvar":"T","qpos":"1419","qlength":"29782","protein":"NSP2","variant":"T223I","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/SHEF-BFF8B/2020|EPI_ISL_418315|2020-03-25","refpos":"20270","refvar":"C","qvar":"T","qpos":"20216","qlength":"29782","protein":"NSP15","variant":"A217V","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/England/NORT-28273C/2020|EPI_ISL_488498|2020-03-28","refpos":"1515","refvar":"A","qvar":"G","qpos":"1461","qlength":"29782","protein":"NSP2","variant":"H237R","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/NORT-28273C/2020|EPI_ISL_488498|2020-03-28","refpos":"9223","refvar":"C","qvar":"T","qpos":"9169","qlength":"29782","protein":"NSP4","variant":"H223H","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/NORT-28273C/2020|EPI_ISL_488498|2020-03-28","refpos":"11083","refvar":"G","qvar":"T","qpos":"11029","qlength":"29782","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/NORT-28273C/2020|EPI_ISL_488498|2020-03-28","refpos":"12331","refvar":"G","qvar":"A","qpos":"12277","qlength":"29782","protein":"NSP8","variant":"R80R","varclass":"SNP_silent","annotation":"Non-Structural protein 8"}
{"sample":"hCoV-19/England/NORT-28273C/2020|EPI_ISL_488498|2020-03-28","refpos":"14805","refvar":"C","qvar":"T","qpos":"14751","qlength":"29782","protein":"NSP12b","variant":"Y446Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/NORT-28273C/2020|EPI_ISL_488498|2020-03-28","refpos":"17247","refvar":"T","qvar":"C","qpos":"17193","qlength":"29782","protein":"NSP13","variant":"R337R","varclass":"SNP_silent","annotation":"Helicase"}
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{"sample":"hCoV-19/England/NOTT-10DF50/2020|EPI_ISL_425473|2020-03-14","refpos":"1515","refvar":"A","qvar":"G","qpos":"1515","qlength":"29903","protein":"NSP2","variant":"H237R","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/NOTT-10DF50/2020|EPI_ISL_425473|2020-03-14","refpos":"9223","refvar":"C","qvar":"T","qpos":"9223","qlength":"29903","protein":"NSP4","variant":"H223H","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/NOTT-10DF50/2020|EPI_ISL_425473|2020-03-14","refpos":"11083","refvar":"G","qvar":"T","qpos":"11083","qlength":"29903","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/England/NOTT-10DF50/2020|EPI_ISL_425473|2020-03-14","refpos":"14697","refvar":"C","qvar":"T","qpos":"14697","qlength":"29903","protein":"NSP12b","variant":"F410F","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
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{"sample":"hCoV-19/England/NOTT-10DF50/2020|EPI_ISL_425473|2020-03-14","refpos":"19017","refvar":"C","qvar":"T","qpos":"19017","qlength":"29903","protein":"NSP14","variant":"F326F","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
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{"sample":"hCoV-19/Australia/VIC710/2020|EPI_ISL_426997|2020-03-29","refpos":"1605","refvar":"ATG","qvar":".","qpos":"1604","qlength":"29900","protein":"NSP2","variant":"D268","varclass":"deletion","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Australia/VIC710/2020|EPI_ISL_426997|2020-03-29","refpos":"1904","refvar":"A","qvar":"G","qpos":"1901","qlength":"29900","protein":"NSP2","variant":"I367V","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/Australia/VIC710/2020|EPI_ISL_426997|2020-03-29","refpos":"8090","refvar":"C","qvar":"T","qpos":"8087","qlength":"29900","protein":"NSP3","variant":"L1791F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/VIC710/2020|EPI_ISL_426997|2020-03-29","refpos":"10789","refvar":"C","qvar":"T","qpos":"10786","qlength":"29900","protein":"NSP5","variant":"D245D","varclass":"SNP_silent","annotation":"3C-like proteinase"}
{"sample":"hCoV-19/Australia/VIC710/2020|EPI_ISL_426997|2020-03-29","refpos":"21575","refvar":"C","qvar":"T","qpos":"21572","qlength":"29900","protein":"S","variant":"L5F","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-1853249/2020|EPI_ISL_492286|2020-04-02","refpos":"1605","refvar":"ATG","qvar":".","qpos":"1550","qlength":"29779","protein":"NSP2","variant":"D268","varclass":"deletion","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/BRIS-1853249/2020|EPI_ISL_492286|2020-04-02","refpos":"24034","refvar":"C","qvar":"T","qpos":"23977","qlength":"29779","protein":"S","variant":"N824N","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/England/BRIS-1853249/2020|EPI_ISL_492286|2020-04-02","refpos":"29518","refvar":"C","qvar":"T","qpos":"29461","qlength":"29779","protein":"N","variant":"D415D","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/NORW-E7193/2020|EPI_ISL_449009|2020-04-20","refpos":"1605","refvar":"ATG","qvar":".","qpos":"1602","qlength":"29898","protein":"NSP2","variant":"D268","varclass":"deletion","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/NORW-E7193/2020|EPI_ISL_449009|2020-04-20","refpos":"8371","refvar":"G","qvar":"T","qpos":"8366","qlength":"29898","protein":"NSP3","variant":"Q1884H","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/NORW-E7193/2020|EPI_ISL_449009|2020-04-20","refpos":"9072","refvar":"C","qvar":"T","qpos":"9067","qlength":"29898","protein":"NSP4","variant":"T173I","varclass":"SNP","annotation":"Transmembrane protein"}
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{"sample":"hCoV-19/England/NORW-E7193/2020|EPI_ISL_449009|2020-04-20","refpos":"21600","refvar":"G","qvar":"A","qpos":"21595","qlength":"29898","protein":"S","variant":"S13N","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/England/SHEF-C7EDE/2020|EPI_ISL_457624|2020-04-15","refpos":"1605","refvar":"ATG","qvar":".","qpos":"1550","qlength":"29779","protein":"NSP2","variant":"D268","varclass":"deletion","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/SHEF-C7EDE/2020|EPI_ISL_457624|2020-04-15","refpos":"1904","refvar":"A","qvar":"G","qpos":"1847","qlength":"29779","protein":"NSP2","variant":"I367V","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/SHEF-C7EDE/2020|EPI_ISL_457624|2020-04-15","refpos":"8090","refvar":"C","qvar":"T","qpos":"8033","qlength":"29779","protein":"NSP3","variant":"L1791F","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/England/SHEF-C7EDE/2020|EPI_ISL_457624|2020-04-15","refpos":"28609","refvar":"C","qvar":"T","qpos":"28552","qlength":"29779","protein":"N","variant":"Y112Y","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/SHEF-C7EDE/2020|EPI_ISL_457624|2020-04-15","refpos":"28657","refvar":"C","qvar":"T","qpos":"28600","qlength":"29779","protein":"N","variant":"D128D","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
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{"sample":"hCoV-19/Brazil/ES-225/2020|EPI_ISL_415128|2020-02-29","refpos":"4423","refvar":"C","qvar":"T","qpos":"4393","qlength":"29762","protein":"NSP3","variant":"R568R","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
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{"sample":"hCoV-19/Brazil/ES-225/2020|EPI_ISL_415128|2020-02-29","refpos":"26144","refvar":"G","qvar":"T","qpos":"26114","qlength":"29762","protein":"ORF3a","variant":"G251V","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/England/200990724/2020|EPI_ISL_414006|2020-02-28","refpos":"2480","refvar":"A","qvar":"G","qpos":"2480","qlength":"29903","protein":"NSP2","variant":"I559V","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/200990724/2020|EPI_ISL_414006|2020-02-28","refpos":"2558","refvar":"C","qvar":"T","qpos":"2558","qlength":"29903","protein":"NSP2","variant":"P585S","varclass":"SNP","annotation":"Non-Structural protein 2"}
{"sample":"hCoV-19/England/200990724/2020|EPI_ISL_414006|2020-02-28","refpos":"14805","refvar":"C","qvar":"T","qpos":"14805","qlength":"29903","protein":"NSP12b","variant":"Y446Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/England/200990724/2020|EPI_ISL_414006|2020-02-28","refpos":"21072","refvar":"T","qvar":"C","qpos":"21072","qlength":"29903","protein":"NSP16","variant":"N138N","varclass":"SNP_silent","annotation":"2'-O-ribose methyltransferase"}
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{"sample":"hCoV-19/India/ILSCV14831/2020|EPI_ISL_463033|2020-05-10","refpos":"28878","refvar":"G","qvar":"A","qpos":"28848","qlength":"29653","protein":"N","variant":"S202N","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Spain/COV000812/2020|EPI_ISL_452715|2020-03-09","refpos":"3022","refvar":"T","qvar":"C","qpos":"3022","qlength":"29903","protein":"NSP3","variant":"H101H","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Spain/COV000812/2020|EPI_ISL_452715|2020-03-09","refpos":"8782","refvar":"C","qvar":"T","qpos":"8782","qlength":"29903","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Spain/COV000812/2020|EPI_ISL_452715|2020-03-09","refpos":"9477","refvar":"T","qvar":"A","qpos":"9477","qlength":"29903","protein":"NSP4","variant":"F308Y","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Spain/COV000812/2020|EPI_ISL_452715|2020-03-09","refpos":"14805","refvar":"C","qvar":"T","qpos":"14805","qlength":"29903","protein":"NSP12b","variant":"Y446Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Spain/COV000812/2020|EPI_ISL_452715|2020-03-09","refpos":"25979","refvar":"G","qvar":"T","qpos":"25979","qlength":"29903","protein":"ORF3a","variant":"G196V","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Spain/COV000812/2020|EPI_ISL_452715|2020-03-09","refpos":"28144","refvar":"T","qvar":"C","qpos":"28144","qlength":"29903","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/Spain/COV000812/2020|EPI_ISL_452715|2020-03-09","refpos":"28657","refvar":"C","qvar":"T","qpos":"28657","qlength":"29903","protein":"N","variant":"D128D","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Spain/COV000812/2020|EPI_ISL_452715|2020-03-09","refpos":"28863","refvar":"C","qvar":"T","qpos":"28863","qlength":"29903","protein":"N","variant":"S197L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Australia/NSW309/2020|EPI_ISL_451573|2020-04-04","refpos":"3037","refvar":"C","qvar":"T","qpos":"2771","qlength":"29408","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/NSW309/2020|EPI_ISL_451573|2020-04-04","refpos":"14408","refvar":"C","qvar":"T","qpos":"14142","qlength":"29408","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/NSW309/2020|EPI_ISL_451573|2020-04-04","refpos":"20268","refvar":"A","qvar":"G","qpos":"20002","qlength":"29408","protein":"NSP15","variant":"L216L","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Australia/NSW309/2020|EPI_ISL_451573|2020-04-04","refpos":"23403","refvar":"A","qvar":"G","qpos":"23137","qlength":"29408","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/Australia/NSW363/2020|EPI_ISL_451624|2020-04-19","refpos":"3037","refvar":"C","qvar":"T","qpos":"2771","qlength":"29408","protein":"NSP3","variant":"F106F","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/NSW363/2020|EPI_ISL_451624|2020-04-19","refpos":"14408","refvar":"C","qvar":"T","qpos":"14142","qlength":"29408","protein":"NSP12b","variant":"P314L","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/NSW363/2020|EPI_ISL_451624|2020-04-19","refpos":"19891","refvar":"G","qvar":"T","qpos":"19625","qlength":"29408","protein":"NSP15","variant":"D91Y","varclass":"SNP","annotation":"endoRNAse"}
{"sample":"hCoV-19/Australia/NSW363/2020|EPI_ISL_451624|2020-04-19","refpos":"23403","refvar":"A","qvar":"G","qpos":"23137","qlength":"29408","protein":"S","variant":"D614G","varclass":"SNP","annotation":"Spike"}
{"sample":"hCoV-19/USA/WA-S756/2020|EPI_ISL_449926|2020-04-14","refpos":"3311","refvar":"C","qvar":"A","qpos":"3303","qlength":"29862","protein":"NSP3","variant":"L198I","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S756/2020|EPI_ISL_449926|2020-04-14","refpos":"8782","refvar":"C","qvar":"T","qpos":"8774","qlength":"29862","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/WA-S756/2020|EPI_ISL_449926|2020-04-14","refpos":"17671","refvar":"G","qvar":"T","qpos":"17663","qlength":"29862","protein":"NSP13","variant":"V479F","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S756/2020|EPI_ISL_449926|2020-04-14","refpos":"17747","refvar":"C","qvar":"T","qpos":"17739","qlength":"29862","protein":"NSP13","variant":"P504L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S756/2020|EPI_ISL_449926|2020-04-14","refpos":"17858","refvar":"A","qvar":"G","qpos":"17850","qlength":"29862","protein":"NSP13","variant":"Y541C","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S756/2020|EPI_ISL_449926|2020-04-14","refpos":"18060","refvar":"C","qvar":"T","qpos":"18052","qlength":"29862","protein":"NSP14","variant":"L7L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WA-S756/2020|EPI_ISL_449926|2020-04-14","refpos":"28144","refvar":"T","qvar":"C","qpos":"28136","qlength":"29862","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/Singapore/119/2020|EPI_ISL_443211|2020-03-18","refpos":"4069","refvar":"C","qvar":"T","qpos":"4069","qlength":"29891","protein":"NSP3","variant":"A450A","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR24/2020|EPI_ISL_425752|2020-03-12","refpos":"4540","refvar":"C","qvar":"T","qpos":"4486","qlength":"29782","protein":"NSP3","variant":"Y607Y","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Scotland/CVR24/2020|EPI_ISL_425752|2020-03-12","refpos":"8782","refvar":"C","qvar":"T","qpos":"8728","qlength":"29782","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Scotland/CVR24/2020|EPI_ISL_425752|2020-03-12","refpos":"9477","refvar":"T","qvar":"A","qpos":"9423","qlength":"29782","protein":"NSP4","variant":"F308Y","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Scotland/CVR24/2020|EPI_ISL_425752|2020-03-12","refpos":"14805","refvar":"C","qvar":"T","qpos":"14751","qlength":"29782","protein":"NSP12b","variant":"Y446Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Scotland/CVR24/2020|EPI_ISL_425752|2020-03-12","refpos":"25979","refvar":"G","qvar":"T","qpos":"25925","qlength":"29782","protein":"ORF3a","variant":"G196V","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/CVR24/2020|EPI_ISL_425752|2020-03-12","refpos":"26029","refvar":"C","qvar":"A","qpos":"25975","qlength":"29782","protein":"ORF3a","variant":"Q213K","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Scotland/CVR24/2020|EPI_ISL_425752|2020-03-12","refpos":"28144","refvar":"T","qvar":"C","qpos":"28090","qlength":"29782","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/Scotland/CVR24/2020|EPI_ISL_425752|2020-03-12","refpos":"28657","refvar":"C","qvar":"T","qpos":"28603","qlength":"29782","protein":"N","variant":"D128D","varclass":"SNP_silent","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Scotland/CVR24/2020|EPI_ISL_425752|2020-03-12","refpos":"28863","refvar":"C","qvar":"T","qpos":"28809","qlength":"29782","protein":"N","variant":"S197L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Wales/PHWC-2AE42/2020|EPI_ISL_432269|2020-04-07","refpos":"6295","refvar":"A","qvar":"G","qpos":"6294","qlength":"29902","protein":"NSP3","variant":"I1192M","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-2AE42/2020|EPI_ISL_432269|2020-04-07","refpos":"7165","refvar":"C","qvar":"A","qpos":"7164","qlength":"29902","protein":"NSP3","variant":"T1482T","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Wales/PHWC-2AE42/2020|EPI_ISL_432269|2020-04-07","refpos":"11083","refvar":"G","qvar":"T","qpos":"11082","qlength":"29902","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Wales/PHWC-2AE42/2020|EPI_ISL_432269|2020-04-07","refpos":"12439","refvar":"C","qvar":"T","qpos":"12438","qlength":"29902","protein":"NSP8","variant":"P116P","varclass":"SNP_silent","annotation":"Non-Structural protein 8"}
{"sample":"hCoV-19/Wales/PHWC-2AE42/2020|EPI_ISL_432269|2020-04-07","refpos":"14805","refvar":"C","qvar":"T","qpos":"14804","qlength":"29902","protein":"NSP12b","variant":"Y446Y","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Wales/PHWC-2AE42/2020|EPI_ISL_432269|2020-04-07","refpos":"20235","refvar":"C","qvar":"T","qpos":"20234","qlength":"29902","protein":"NSP15","variant":"P205P","varclass":"SNP_silent","annotation":"endoRNAse"}
{"sample":"hCoV-19/Wales/PHWC-2AE42/2020|EPI_ISL_432269|2020-04-07","refpos":"26111","refvar":"C","qvar":"T","qpos":"26110","qlength":"29902","protein":"ORF3a","variant":"P240L","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Wales/PHWC-2AE42/2020|EPI_ISL_432269|2020-04-07","refpos":"26144","refvar":"G","qvar":"T","qpos":"26143","qlength":"29902","protein":"ORF3a","variant":"G251V","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Wales/PHWC-2AE42/2020|EPI_ISL_432269|2020-04-07","refpos":"28842","refvar":"G","qvar":"T","qpos":"28841","qlength":"29902","protein":"N","variant":"S190I","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Singapore/558/2020|EPI_ISL_483581|2020-04-11","refpos":"6310","refvar":"C","qvar":"A","qpos":"6300","qlength":"29881","protein":"NSP3","variant":"S1197R","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Singapore/558/2020|EPI_ISL_483581|2020-04-11","refpos":"6312","refvar":"C","qvar":"A","qpos":"6302","qlength":"29881","protein":"NSP3","variant":"T1198K","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Singapore/558/2020|EPI_ISL_483581|2020-04-11","refpos":"11083","refvar":"G","qvar":"T","qpos":"11073","qlength":"29881","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Singapore/558/2020|EPI_ISL_483581|2020-04-11","refpos":"13730","refvar":"C","qvar":"T","qpos":"13720","qlength":"29881","protein":"NSP12b","variant":"A88V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Singapore/558/2020|EPI_ISL_483581|2020-04-11","refpos":"19524","refvar":"C","qvar":"T","qpos":"19514","qlength":"29881","protein":"NSP14","variant":"L495L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Singapore/558/2020|EPI_ISL_483581|2020-04-11","refpos":"23929","refvar":"C","qvar":"T","qpos":"23919","qlength":"29881","protein":"S","variant":"Y789Y","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Singapore/558/2020|EPI_ISL_483581|2020-04-11","refpos":"28311","refvar":"C","qvar":"T","qpos":"28301","qlength":"29881","protein":"N","variant":"P13L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/Singapore/558/2020|EPI_ISL_483581|2020-04-11","refpos":"29717","refvar":"G","qvar":"T","qpos":"29707","qlength":"29881","protein":"3'UTR","variant":"29717","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WA-S459/2020|EPI_ISL_434219|2020-04-06","refpos":"6310","refvar":"C","qvar":"T","qpos":"6259","qlength":"29813","protein":"NSP3","variant":"S1197S","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/USA/WA-S459/2020|EPI_ISL_434219|2020-04-06","refpos":"8782","refvar":"C","qvar":"T","qpos":"8731","qlength":"29813","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/USA/WA-S459/2020|EPI_ISL_434219|2020-04-06","refpos":"17747","refvar":"C","qvar":"T","qpos":"17696","qlength":"29813","protein":"NSP13","variant":"P504L","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S459/2020|EPI_ISL_434219|2020-04-06","refpos":"17858","refvar":"A","qvar":"G","qpos":"17807","qlength":"29813","protein":"NSP13","variant":"Y541C","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/USA/WA-S459/2020|EPI_ISL_434219|2020-04-06","refpos":"18060","refvar":"C","qvar":"T","qpos":"18009","qlength":"29813","protein":"NSP14","variant":"L7L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/USA/WA-S459/2020|EPI_ISL_434219|2020-04-06","refpos":"27327","refvar":"G","qvar":"T","qpos":"27276","qlength":"29813","protein":"ORF6","variant":"K42N","varclass":"SNP","annotation":"ORF6 protein"}
{"sample":"hCoV-19/USA/WA-S459/2020|EPI_ISL_434219|2020-04-06","refpos":"28144","refvar":"T","qvar":"C","qpos":"28093","qlength":"29813","protein":"ORF8","variant":"L84S","varclass":"SNP","annotation":"ORF8 protein"}
{"sample":"hCoV-19/Australia/QLDID921/2020|EPI_ISL_417033|2020-03-11","refpos":"6312","refvar":"C","qvar":"A","qpos":"6307","qlength":"29865","protein":"NSP3","variant":"T1198K","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/Australia/QLDID921/2020|EPI_ISL_417033|2020-03-11","refpos":"11083","refvar":"G","qvar":"T","qpos":"11078","qlength":"29865","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Australia/QLDID921/2020|EPI_ISL_417033|2020-03-11","refpos":"13730","refvar":"C","qvar":"T","qpos":"13725","qlength":"29865","protein":"NSP12b","variant":"A88V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/Australia/QLDID921/2020|EPI_ISL_417033|2020-03-11","refpos":"23929","refvar":"C","qvar":"T","qpos":"23924","qlength":"29865","protein":"S","variant":"Y789Y","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/Australia/QLDID921/2020|EPI_ISL_417033|2020-03-11","refpos":"28311","refvar":"C","qvar":"T","qpos":"28306","qlength":"29865","protein":"N","variant":"P13L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/CCMB_K272/2020|EPI_ISL_458070|2020-04-12","refpos":"6312","refvar":"C","qvar":"A","qpos":"6272","qlength":"29824","protein":"NSP3","variant":"T1198K","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/CCMB_K272/2020|EPI_ISL_458070|2020-04-12","refpos":"11083","refvar":"G","qvar":"T","qpos":"11043","qlength":"29824","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/India/CCMB_K272/2020|EPI_ISL_458070|2020-04-12","refpos":"13730","refvar":"C","qvar":"T","qpos":"13690","qlength":"29824","protein":"NSP12b","variant":"A88V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/CCMB_K272/2020|EPI_ISL_458070|2020-04-12","refpos":"17762","refvar":"CT","qvar":"GG","qpos":"17722","qlength":"29824","protein":"NSP13","variant":"A509G","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/India/CCMB_K272/2020|EPI_ISL_458070|2020-04-12","refpos":"17959","refvar":"A","qvar":"G","qpos":"17919","qlength":"29824","protein":"NSP13","variant":"I575V","varclass":"SNP","annotation":"Helicase"}
{"sample":"hCoV-19/India/CCMB_K272/2020|EPI_ISL_458070|2020-04-12","refpos":"19524","refvar":"C","qvar":"T","qpos":"19484","qlength":"29824","protein":"NSP14","variant":"L495L","varclass":"SNP_silent","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/India/CCMB_K272/2020|EPI_ISL_458070|2020-04-12","refpos":"23929","refvar":"C","qvar":"T","qpos":"23889","qlength":"29824","protein":"S","variant":"Y789Y","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/India/CCMB_K272/2020|EPI_ISL_458070|2020-04-12","refpos":"28311","refvar":"C","qvar":"T","qpos":"28271","qlength":"29824","protein":"N","variant":"P13L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/GBRC16/2020|EPI_ISL_437444|2020-04-26","refpos":"6312","refvar":"C","qvar":"A","qpos":"6312","qlength":"29903","protein":"NSP3","variant":"T1198K","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/GBRC16/2020|EPI_ISL_437444|2020-04-26","refpos":"11083","refvar":"G","qvar":"T","qpos":"11083","qlength":"29903","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/India/GBRC16/2020|EPI_ISL_437444|2020-04-26","refpos":"11200","refvar":"C","qvar":"T","qpos":"11200","qlength":"29903","protein":"NSP6","variant":"A76A","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/India/GBRC16/2020|EPI_ISL_437444|2020-04-26","refpos":"13730","refvar":"C","qvar":"T","qpos":"13730","qlength":"29903","protein":"NSP12b","variant":"A88V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC16/2020|EPI_ISL_437444|2020-04-26","refpos":"16017","refvar":"C","qvar":"T","qpos":"16017","qlength":"29903","protein":"NSP12b","variant":"F850F","varclass":"SNP_silent","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/GBRC16/2020|EPI_ISL_437444|2020-04-26","refpos":"23929","refvar":"C","qvar":"T","qpos":"23929","qlength":"29903","protein":"S","variant":"Y789Y","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC16/2020|EPI_ISL_437444|2020-04-26","refpos":"25354","refvar":"G","qvar":"T","qpos":"25354","qlength":"29903","protein":"S","variant":"V1264V","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/India/GBRC16/2020|EPI_ISL_437444|2020-04-26","refpos":"28311","refvar":"C","qvar":"T","qpos":"28311","qlength":"29903","protein":"N","variant":"P13L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/India/NCDC-02244/2020|EPI_ISL_435092|2020-03-28","refpos":"6312","refvar":"C","qvar":"A","qpos":"6312","qlength":"29866","protein":"NSP3","variant":"T1198K","varclass":"SNP","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/India/NCDC-02244/2020|EPI_ISL_435092|2020-03-28","refpos":"11083","refvar":"G","qvar":"T","qpos":"11083","qlength":"29866","protein":"NSP6","variant":"L37F","varclass":"SNP","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/India/NCDC-02244/2020|EPI_ISL_435092|2020-03-28","refpos":"13730","refvar":"C","qvar":"T","qpos":"13730","qlength":"29866","protein":"NSP12b","variant":"A88V","varclass":"SNP","annotation":"RNA-dependent RNA polymerase, post-ribosomal frameshift"}
{"sample":"hCoV-19/India/NCDC-02244/2020|EPI_ISL_435092|2020-03-28","refpos":"23929","refvar":"C","qvar":"T","qpos":"23929","qlength":"29866","protein":"S","variant":"Y789Y","varclass":"SNP_silent","annotation":"Spike"}
{"sample":"hCoV-19/India/NCDC-02244/2020|EPI_ISL_435092|2020-03-28","refpos":"28311","refvar":"C","qvar":"T","qpos":"28311","qlength":"29866","protein":"N","variant":"P13L","varclass":"SNP","annotation":"Nucleocapsid protein"}
{"sample":"hCoV-19/England/20142014904/2020|EPI_ISL_465921|2020-03-30","refpos":"7876","refvar":"T","qvar":"A","qpos":"7876","qlength":"29903","protein":"NSP3","variant":"P1719P","varclass":"SNP_silent","annotation":"Predicted phosphoesterase, papain-like proteinase"}
{"sample":"hCoV-19/England/20142014904/2020|EPI_ISL_465921|2020-03-30","refpos":"26144","refvar":"G","qvar":"T","qpos":"26144","qlength":"29903","protein":"ORF3a","variant":"G251V","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/Australia/NSW543/2020|EPI_ISL_455082|2020-03-31","refpos":"8782","refvar":"C","qvar":"T","qpos":"8516","qlength":"29408","protein":"NSP4","variant":"S76S","varclass":"SNP_silent","annotation":"Transmembrane protein"}
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{"sample":"hCoV-19/Japan/PG-0053/2020|EPI_ISL_479816|2020-03-06","refpos":"19170","refvar":"C","qvar":"A","qpos":"19093","qlength":"29738","protein":"NSP14","variant":"F377L","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Japan/PG-0100/2020|EPI_ISL_479843|2020-03-09","refpos":"11752","refvar":"C","qvar":"T","qpos":"11675","qlength":"29766","protein":"NSP6","variant":"L260L","varclass":"SNP_silent","annotation":"Transmembrane protein"}
{"sample":"hCoV-19/Japan/PG-0100/2020|EPI_ISL_479843|2020-03-09","refpos":"19170","refvar":"C","qvar":"A","qpos":"19093","qlength":"29766","protein":"NSP14","variant":"F377L","varclass":"SNP","annotation":"3'-to-5' exonuclease"}
{"sample":"hCoV-19/Wuhan/HB-WHCM-109/2020|EPI_ISL_454992|2020-02-27","refpos":"26144","refvar":"G","qvar":"T","qpos":"26144","qlength":"29903","protein":"ORF3a","variant":"G251V","varclass":"SNP","annotation":"ORF3a protein"}
{"sample":"hCoV-19/USA/WI-UW-196/2020|EPI_ISL_428292|2020-03-21","refpos":"29711","refvar":"G","qvar":"T","qpos":"29657","qlength":"29782","protein":"3'UTR","variant":"29711","varclass":"extragenic"}
{"sample":"hCoV-19/USA/WI-UW-238/2020|EPI_ISL_428334|2020-03-27","refpos":"29711","refvar":"G","qvar":"T","qpos":"29657","qlength":"29782","protein":"3'UTR","variant":"29711","varclass":"extragenic"}