{ "_id": "6abe375399f7aa8c6aa53dce", "Package": "chromseq", "Type": "Package", "Title": "Split Chromosome 'Fasta' File", "Description": "Chromosome files in the 'Fasta' format usually contain\nlarge sequences like human genome. Sometimes users have to\nsplit these chromosomes into different files according to their\nchromosome number. The 'chromseq' can help to handle this. So\nthe selected chromosome sequence can be used for downstream\nanalysis like motif finding. Howard Y. Chang(2019)\n.", "Version": "0.1.3", "Authors@R": "person(given = \"Shaoqian\", family = \"Ma\", email = \"897341109@qq.com\", role = c(\"aut\", \"cre\"))", "License": "Artistic-2.0", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.0.2", "NeedsCompilation": "no", "URL": "https://github.com/MSQ-123/chromseq", "BugReports": "https://github.com/MSQ-123/chromseq/issues", "Repository": "https://msq-123.r-universe.dev", "Date/Publication": "2020-05-19 08:34:02 UTC", "RemoteUrl": "https://github.com/msq-123/chromseq", "RemoteRef": "HEAD", "RemoteSha": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "Packaged": { "Date": "2026-10-01 10:30:49 UTC", "User": "root" }, "Author": "Shaoqian Ma [aut, cre]", "Maintainer": "Shaoqian Ma <897341109@qq.com>", "_user": "msq-123", "_type": "src", "_file": "chromseq_0.1.3.tar.gz", "_fileid": "https://r2.ropensci.org/71eb9686bda361d4a7039836009b18943fa7678068c2e357ff76f66f29e802f9", "_filesize": 156849, "_sha256": "71eb9686bda361d4a7039836009b18943fa7678068c2e357ff76f66f29e802f9", "_expires": "2027-01-09T10:34:55.000Z", "_created": "2026-10-01T10:30:49.000Z", "_published": "2026-10-01T10:34:58.915Z", "_jobs": [ { "job": 110327964107, "time": 102, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11154868169" }, { "job": 110327964010, "time": 104, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11154719405" }, { "job": 110327964236, "time": 174, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11154728903" }, { "job": 110327964158, "time": 193, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11155110952" }, { "job": 110326796712, "time": 205, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11154409812" }, { "job": 110327964022, "time": 97, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11154089604" }, { "job": 110327964146, "time": 53, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11154628904" }, { "job": 110327964216, "time": 48, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11154484443" }, { "job": 110327964262, "time": 59, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11154694376" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/msq-123/actions/runs/36849225683", "_status": "success", "_upstream": "https://github.com/msq-123/chromseq", "_commit": { "id": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "author": "msq <897341109@qq.com>", "committer": "msq <897341109@qq.com>", "message": "check the data reference\n", "time": 1589877242 }, "_maintainer": { "name": "Shaoqian Ma", "email": "897341109@qq.com", "login": "msq-123", "description": "", "uuid": 54383785 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "base", "role": "Imports" } ], "_owner": "msq-123", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 4, "_contributors": [ { "user": "msq-123", "count": 8, "uuid": 54383785 } ], "_userbio": { "uuid": 54383785, "type": "user", "name": "shaoqian ma", "followers": 3 }, "_downloads": { "count": 288, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/chromseq" }, "_devurl": "https://github.com/msq-123/chromseq", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/chromseq.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/msq-123/chromseq", "_realowner": "msq-123", "_cranurl": true, "_releases": [ { "version": "0.1.3", "date": "2020-05-11" } ], "_exports": [ "readToList", "replaceText", "sortList", "splitChr", "subFasID" ], "_datasets": [ { "name": "id", "title": "Sampled Fasta file of chromosome sequence from hg19 blacklist", "object": "id", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "tex", "title": "Fasta file of chromosome sequence produced from sequence character", "object": "tex", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "text", "title": "Fasta file of chromosome sequence", "object": "text", "class": [ "character" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "id", "title": "Sampled Fasta file of chromosome sequence from hg19 blacklist", "topics": [ "id" ] }, { "page": "readToList", "title": "Make a list file from large chromosome Fasta file", "topics": [ "readToList" ] }, { "page": "replaceText", "title": "Replace tedious chromosome identifier into simple format", "topics": [ "replaceText" ] }, { "page": "sortList", "title": "Sort the chromosome list according to the chromosome number", "topics": [ "sortList" ] }, { "page": "splitChr", "title": "Split all chromosomes from the sorted chromosome list", "topics": [ "splitChr" ] }, { "page": "subFasID", "title": "Subtract chromosome ids from Fasta file", "topics": [ "subFasID" ] }, { "page": "tex", "title": "Fasta file of chromosome sequence produced from sequence character", "topics": [ "tex" ] }, { "page": "text", "title": "Fasta file of chromosome sequence", "topics": [ "text" ] } ], "_readme": "https://github.com/msq-123/chromseq/raw/HEAD/README.md", "_rundeps": [], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "chromseq", "_universes": [ "msq-123" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-10-01T10:32:44.000Z", "distro": "resolute", "commit": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "fileid": "https://r2.ropensci.org/44ef0b4b6497da55dffa32c24f19d1bad1c8b8d7596ca45a710b812d02bf6258", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/msq-123/actions/runs/36849225683" }, { "r": "4.6.1", "os": "linux", "version": "0.1.3", "date": "2026-10-01T10:32:41.000Z", "distro": "resolute", "commit": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "fileid": "https://r2.ropensci.org/b00006f3d0bf86cdaf9d2693f8bbdde0d8ef5cab6f1e8b80817f6b07e5596ae5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/msq-123/actions/runs/36849225683" }, { "r": "4.5.3", "os": "mac", "version": "0.1.3", "date": "2026-10-01T10:33:21.000Z", "commit": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "fileid": "https://r2.ropensci.org/5f83f98c4f5ba1debc4c5e20a1675fc885df31978355cd4dc245f409b8e92146", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/msq-123/actions/runs/36849225683" }, { "r": "4.6.1", "os": "mac", "version": "0.1.3", "date": "2026-10-01T10:33:15.000Z", "commit": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "fileid": "https://r2.ropensci.org/8b5b9a5ebfc01e3fe59159cb34be0fec0c69b4ae9ff831d3c0d84230670545bd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/msq-123/actions/runs/36849225683" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.3", "date": "2026-10-01T10:32:43.000Z", "commit": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "fileid": "https://r2.ropensci.org/042d365a1bb94910bd2848163e5ab8a6a7093c666c221c129c0ffa73ec39d2d0", "status": "success", "buildurl": "https://github.com/r-universe/msq-123/actions/runs/36849225683" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-10-01T10:31:46.000Z", "commit": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "fileid": "https://r2.ropensci.org/3a55cf17439e2142aa55746c234074f56bc363a5cd8e599c31d1ee6e1ea15d6a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/msq-123/actions/runs/36849225683" }, { "r": "4.5.3", "os": "win", "version": "0.1.3", "date": "2026-10-01T10:31:43.000Z", "commit": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "fileid": "https://r2.ropensci.org/ba65834e495c1ec188a3c59319c3af268357449955e69ebc80457679587d239e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/msq-123/actions/runs/36849225683" }, { "r": "4.6.1", "os": "win", "version": "0.1.3", "date": "2026-10-01T10:31:53.000Z", "commit": "76ec38c79b866a8b3cbae4a63ea70bc05ba7ab0a", "fileid": "https://r2.ropensci.org/04b54821500a921f4325fc4b82541957690d33d81a89e5147e31c670a3a39444", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/msq-123/actions/runs/36849225683" } ] }