1. chromseq::id
    Sampled Fasta file of chromosome sequence from hg19 blacklist
    json| rda| rds
    character
  2. chromseq::tex
    Fasta file of chromosome sequence produced from sequence character
    json| rda| rds
    list
  3. chromseq::text
    Fasta file of chromosome sequence
    json| rda| rds
    character
  4. CovidMutations::assays
    Assays for mutation detection using different primers and probes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 7
  5. CovidMutations::chinalist
    A list of places in China
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31 x 1
  6. CovidMutations::covid_annot
    Mutation annotation results produced by "indelSNP" function
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3258 x 10
  7. CovidMutations::gene_position
    "GFF3" format gene position data for SARS-Cov-2
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 10
  8. CovidMutations::gff3
    "GFF3" format annotation data for SARS-Cov-2
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 10
  9. CovidMutations::nucmer
    Mutation information derived from "nucmer" SNP analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3660 x 14
  10. CovidMutations::nucmerr
    Preprocessed "nucmer.snpss" file using "nucmerRMD" function
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3660 x 10
  11. CovidMutations::refseq
    SARS-Cov-2 genomic reference sequence from NCBI
    rda| rds
    SeqFastadna