CovidMutations - Mutation Analysis and Assay Validation Toolkit for COVID-19 (Coronavirus Disease 2019)
A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples<doi:10.20944/preprints202004.0529.v1>.
Last updated 5 years ago
4.30 score 4 stars 6 scripts 214 downloadschromseq - Split Chromosome 'Fasta' File
Chromosome files in the 'Fasta' format usually contain large sequences like human genome. Sometimes users have to split these chromosomes into different files according to their chromosome number. The 'chromseq' can help to handle this. So the selected chromosome sequence can be used for downstream analysis like motif finding. Howard Y. Chang(2019) <doi:10.1038/s41587-019-0206-z>.
Last updated 5 years ago
3.30 score 4 stars 203 downloads